View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13427_low_31 (Length: 242)

Name: NF13427_low_31
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13427_low_31
NF13427_low_31
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-226)||(167397-167622)
[»] chr3 (31 HSPs)
chr3 (23-147)||(23456168-23456295)
chr3 (26-143)||(23465541-23465661)
chr3 (26-146)||(23406884-23407007)
chr3 (27-147)||(23449404-23449527)
chr3 (3-152)||(23480889-23481041)
chr3 (27-143)||(23501171-23501290)
chr3 (24-152)||(23388518-23388649)
chr3 (167-226)||(23435499-23435558)
chr3 (75-152)||(23435597-23435674)
chr3 (75-152)||(23474541-23474618)
chr3 (75-147)||(23442014-23442086)
chr3 (167-226)||(23353931-23353990)
chr3 (167-226)||(23406780-23406839)
chr3 (167-226)||(23465434-23465493)
chr3 (167-226)||(23480791-23480850)
chr3 (167-226)||(23501064-23501123)
chr3 (23-152)||(23354029-23354160)
chr3 (167-226)||(23449301-23449360)
chr3 (167-224)||(23388422-23388479)
chr3 (167-226)||(23441911-23441970)
chr3 (167-226)||(23474443-23474502)
chr3 (169-226)||(23456065-23456122)
chr3 (98-152)||(21087516-21087570)
chr3 (76-142)||(35766091-35766157)
chr3 (84-146)||(36025599-36025661)
chr3 (167-223)||(21088609-21088665)
chr3 (167-226)||(21087418-21087477)
chr3 (167-222)||(36017404-36017459)
chr3 (167-222)||(36034314-36034369)
chr3 (95-146)||(36004838-36004889)
chr3 (173-222)||(36009789-36009838)
[»] scaffold0570 (3 HSPs)
scaffold0570 (27-152)||(9506-9634)
scaffold0570 (167-226)||(9673-9732)
scaffold0570 (110-143)||(3153-3186)
[»] scaffold0201 (2 HSPs)
scaffold0201 (75-152)||(13706-13783)
scaffold0201 (167-226)||(13608-13667)
[»] chr4 (2 HSPs)
chr4 (75-147)||(12894523-12894595)
chr4 (167-222)||(12894636-12894691)
[»] chr2 (6 HSPs)
chr2 (167-222)||(16124918-16124973)
chr2 (167-222)||(16127071-16127126)
chr2 (167-222)||(16334678-16334733)
chr2 (84-146)||(16125018-16125080)
chr2 (84-146)||(16127171-16127233)
chr2 (84-146)||(16334571-16334633)
[»] chr6 (3 HSPs)
chr6 (82-120)||(28491780-28491818)
chr6 (82-120)||(29804190-29804228)
chr6 (82-119)||(29733309-29733346)
[»] chr5 (1 HSPs)
chr5 (88-141)||(16466298-16466351)


Alignment Details
Target: scaffold0022 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 167397 - 167622
Alignment:
Q  1 cccttggaattgataaacgctacgcagaaaatgagcagtgttttttcctcagtatctactgatgtggggcctaagaaaaaatatgatgtgtttcttagct 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  167397 cccttggaattgataaacgctgcgcagaaaatgagcagtgttttttcctctgtatctactgatgtggggcctaagaaaaaatatgatgtgtttcttagct 167496  T
Q  101 ttcgaggtgaggatactcgcagaaacttcacaagccatctttatgattctcttgcagccaacacttagcttcaaaaaggagatgagatctcgccagcact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||    
T  167497 ttcgaggtgaggatactcgcagaaacttcacaagccatctttatgattctctcgcagacaacactgagcttcaaaaaggagatgagatctcgccaacact 167596  T
Q  201 catcaaagccattgaggagtcacatg 226  Q
    |||||||||||||||||||| |||||    
T  167597 catcaaagccattgaggagtaacatg 167622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 23456295 - 23456168
Alignment:
Q  23 cgcagaaaatgagcagtgttttttcctcagtatctactg---atgtggggcctaagaaaaaatatgatgtgtttcttagctttcgaggtgaggatactcg 119  Q
    |||||||||||||||||| |||||||||  ||||| ||    |||||||||||  |||||||||||| || |||||||||||||||||||||||||||||    
T  23456295 cgcagaaaatgagcagtgctttttcctctatatcttcttcttatgtggggcctccgaaaaaatatgacgtttttcttagctttcgaggtgaggatactcg 23456196  T
Q  120 cagaaacttcacaagccatctttatgat 147  Q
    ||||||||||||||||||||||||||||    
T  23456195 cagaaacttcacaagccatctttatgat 23456168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 23465661 - 23465541
Alignment:
Q  26 agaaaatgagcagtgttttttcctcagtatctact---gatgtggggcctaagaaaaaatatgatgtgtttcttagctttcgaggtgaggatactcgcag 122  Q
    ||||||||||||||| ||||||||| |||||| ||   |||||||  ||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  23465661 agaaaatgagcagtgctttttcctctgtatcttcttctgatgtggtccctaagaaaaaatatgaggtttttcttagctttcgaggtgaggatactcgcag 23465562  T
Q  123 aaacttcacaagccatcttta 143  Q
    ||||||||| |||||||||||    
T  23465561 aaacttcactagccatcttta 23465541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 23407007 - 23406884
Alignment:
Q  26 agaaaatgagcagtgttttttcctcagtatctact---gatgtggggcctaagaaaaaatatgatgtgtttcttagctttcgaggtgaggatactcgcag 122  Q
    ||||||||||||||| |||||||||  ||||| ||   |||||||  ||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  23407007 agaaaatgagcagtgctttttcctctatatcttcttctgatgtggtccctaagaaaaaatatgaagtttttcttagctttcgaggtgaggatactcgcag 23406908  T
Q  123 aaacttcacaagccatctttatga 146  Q
    ||||||||| ||||||||||||||    
T  23406907 aaacttcactagccatctttatga 23406884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 27 - 147
Target Start/End: Complemental strand, 23449527 - 23449404
Alignment:
Q  27 gaaaatgagcagtgttttttcctc---agtatctactgatgtggggcctaagaaaaaatatgatgtgtttcttagctttcgaggtgaggatactcgcaga 123  Q
    ||||||||||||||  ||||||||   ||| ||| ||||||||| |||| ||||||||||||| || |||||||||||||||||||||||||||||||||    
T  23449527 gaaaatgagcagtgccttttcctctatagtttcttctgatgtggtgcctcagaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcaga 23449428  T
Q  124 aacttcacaagccatctttatgat 147  Q
    |||||||| |||||||||||||||    
T  23449427 aacttcactagccatctttatgat 23449404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 23481041 - 23480889
Alignment:
Q  3 cttggaattgataaacgctacgcagaaaatgagcagtgttttttcctcagta---tctactgatgtggggcctaagaaaaaatatgatgtgtttcttagc 99  Q
    ||||||||| |||| | ||| | ||||||||||||||| |||||| ||  ||   ||| ||||||||| ||||  |||||||||||| || |||||||||    
T  23481041 cttggaattcataatcactaggtagaaaatgagcagtgctttttcttccatatcttcttctgatgtggtgcctctgaaaaaatatgacgtttttcttagc 23480942  T
Q  100 tttcgaggtgaggatactcgcagaaacttcacaagccatctttatgattctct 152  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  23480941 tttcgaggtgaggatactcgcagaaacttcaccagccatctttatgatgctct 23480889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 23501290 - 23501171
Alignment:
Q  27 gaaaatgagcagtgttttttcctc---agtatctactgatgtggggcctaagaaaaaatatgatgtgtttcttagctttcgaggtgaggatactcgcaga 123  Q
    |||||||||||||| |||||||||   ||| ||| ||||||||| |||| |||||||||||||  | |||||||||||||||||||||||||||||||||    
T  23501290 gaaaatgagcagtgctttttcctctatagtttcttctgatgtggtgcctcagaaaaaatatgacatttttcttagctttcgaggtgaggatactcgcaga 23501191  T
Q  124 aacttcacaagccatcttta 143  Q
    |||||||| |||||||||||    
T  23501190 aacttcactagccatcttta 23501171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 23388649 - 23388518
Alignment:
Q  24 gcagaaaatgagcagtgttttttcctcagtatctactga---tgtggggcctaagaaaaaatatgatgtgtttcttagctttcgaggtgaggatactcgc 120  Q
    ||||||||||||||||| ||||||||| |||||  ||     ||||| |||| ||||||||||||| || |||||||||||||||||||| |||||||||    
T  23388649 gcagaaaatgagcagtgctttttcctctgtatcctcttcctctgtggcgcctcagaaaaaatatgacgtttttcttagctttcgaggtgatgatactcgc 23388550  T
Q  121 agaaacttcacaagccatctttatgattctct 152  Q
    ||||||||||| ||||||||||||||| ||||    
T  23388549 agaaacttcacgagccatctttatgatactct 23388518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 23435558 - 23435499
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatg 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23435558 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatg 23435499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 23435674 - 23435597
Alignment:
Q  75 gaaaaaatatgatgtgtttcttagctttcgaggtgaggatactcgcagaaacttcacaagccatctttatgattctct 152  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||    
T  23435674 gaaaaaatatgacgtttttcttagctttcgaggtgaggatacccgcagaaacttcacatgccatctttatgatgctct 23435597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 23474618 - 23474541
Alignment:
Q  75 gaaaaaatatgatgtgtttcttagctttcgaggtgaggatactcgcagaaacttcacaagccatctttatgattctct 152  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||    
T  23474618 gaaaaaatatgacgtttttcttagctttcgaggtgaggatacccgcagaaacttcacatgccatctttatgatgctct 23474541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 23442086 - 23442014
Alignment:
Q  75 gaaaaaatatgatgtgtttcttagctttcgaggtgaggatactcgcagaaacttcacaagccatctttatgat 147  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  23442086 gaaaaaatatgacgtttttcttagctttcgaggtgaggatacccgcagaaacttcacatgccatctttatgat 23442014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 23353990 - 23353931
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatg 226  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23353990 agcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatg 23353931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 23406839 - 23406780
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatg 226  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23406839 agcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatg 23406780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 23465493 - 23465434
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatg 226  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23465493 agcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatg 23465434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 23480850 - 23480791
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatg 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23480850 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgagaagtcacatg 23480791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 23501123 - 23501064
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatg 226  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23501123 agcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatg 23501064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 152
Target Start/End: Complemental strand, 23354160 - 23354029
Alignment:
Q  23 cgcagaaaatgagcagtgttttttcctcagtatctact---gatgtggggcctaagaaaaaatatgatgtgtttcttagctttcgaggtgaggatactcg 119  Q
    ||||||||||||  |||| |||||||||  ||||| ||   ||||||||||||  |||||||||||| || ||||||||||||||||  |||||||| ||    
T  23354160 cgcagaaaatgactagtgctttttcctctatatcttcttctgatgtggggcctccgaaaaaatatgacgtttttcttagctttcgagc-gaggatacccg 23354062  T
Q  120 cagaaacttcacaagccatctttatgattctct 152  Q
    |||||||||||| ||||||||||||||| ||||    
T  23354061 cagaaacttcacgagccatctttatgatgctct 23354029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 23449360 - 23449301
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatg 226  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23449360 agcttcgaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatg 23449301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 23388479 - 23388422
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcaca 224  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23388479 agcttgaaaaaggagatgagatctcaccagcactcatcaaagccattgaggagtcaca 23388422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 23441970 - 23441911
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatg 226  Q
    ||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||    
T  23441970 agcttcaaaaaggagataagatatcgccagcactcatcagagccattgaggagtcacatg 23441911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 23474502 - 23474443
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatg 226  Q
    ||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||    
T  23474502 agcttcaaaaaggagataagatatcgccagcactcatcagagccattgaggagtcacatg 23474443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 23456122 - 23456065
Alignment:
Q  169 cttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatg 226  Q
    ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||    
T  23456122 cttcaaaaaggagatgagatctcaccaacactcatcaaaaccattgaggagtcacatg 23456065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 21087570 - 21087516
Alignment:
Q  98 gctttcgaggtgaggatactcgcagaaacttcacaagccatctttatgattctct 152  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  21087570 gctttcgaggtgaggatactcgcaaaaacatcacaagccatctttatgatgctct 21087516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 35766091 - 35766157
Alignment:
Q  76 aaaaaatatgatgtgtttcttagctttcgaggtgaggatactcgcagaaacttcacaagccatcttt 142  Q
    |||||||||||||| |||||||||||||||||||| |||||||||   ||| |||||||||||||||    
T  35766091 aaaaaatatgatgtttttcttagctttcgaggtgaagatactcgcgacaacatcacaagccatcttt 35766157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 36025661 - 36025599
Alignment:
Q  84 tgatgtgtttcttagctttcgaggtgaggatactcgcagaaacttcacaagccatctttatga 146  Q
    |||||| ||| | |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  36025661 tgatgtttttatcagctttcgtggtgaggatactcgtagaaacttcacaagccatctttatga 36025599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 21088665 - 21088609
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcac 223  Q
    ||||| |||||||||| ||||||||||||||| ||||| |||| |||||||||||||    
T  21088665 agcttaaaaaaggagacgagatctcgccagcattcatcgaagctattgaggagtcac 21088609  T

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Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 21087477 - 21087418
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatg 226  Q
    ||||| ||||||||||| ||||| | |||| |||||||||||||||||| ||||||||||    
T  21087477 agcttaaaaaaggagataagatcacaccagaactcatcaaagccattgaagagtcacatg 21087418  T

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Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 36017459 - 36017404
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtca 222  Q
    ||||| |||||||||| ||||||||  ||||||| |||||||||||||||||||||    
T  36017459 agcttgaaaaaggagacgagatctcatcagcactgatcaaagccattgaggagtca 36017404  T

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Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 36034369 - 36034314
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtca 222  Q
    ||||| |||||||||| ||||||||  ||||||| |||||||||||||||||||||    
T  36034369 agcttgaaaaaggagacgagatctcatcagcactgatcaaagccattgaggagtca 36034314  T

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Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 36004889 - 36004838
Alignment:
Q  95 ttagctttcgaggtgaggatactcgcagaaacttcacaagccatctttatga 146  Q
    |||||||| | |||||||||||| | ||||| ||||||||||||||||||||    
T  36004889 ttagcttttgtggtgaggatactggtagaaagttcacaagccatctttatga 36004838  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 36009838 - 36009789
Alignment:
Q  173 aaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtca 222  Q
    |||||||||||||||| ||  || |||| |||||||||||||||||||||    
T  36009838 aaaaaggagatgagatatcatcatcactaatcaaagccattgaggagtca 36009789  T

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Target: scaffold0570 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 9506 - 9634
Alignment:
Q  27 gaaaatgagcagtgttttttcctc---agtatctactgatgtggggcctaagaaaaaatatgatgtgtttcttagctttcgaggtgaggatactcgcaga 123  Q
    |||||||||||||| | |||||||   ||| ||| ||||||||| |||| |||||||||||||  | |||||||||||||||||||||||||||||||||    
T  9506 gaaaatgagcagtgctatttcctctatagtttcttctgatgtggtgcctcagaaaaaatatgacatttttcttagctttcgaggtgaggatactcgcaga 9605  T
Q  124 aacttcacaagccatctttatgattctct 152  Q
    ||||| |||||||||||||||||| ||||    
T  9606 aacttaacaagccatctttatgatgctct 9634  T

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Target: scaffold0570; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 9673 - 9732
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatg 226  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9673 agcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatg 9732  T

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Target: scaffold0570; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 143
Target Start/End: Original strand, 3153 - 3186
Alignment:
Q  110 aggatactcgcagaaacttcacaagccatcttta 143  Q
    ||||||||||||||||| ||||||||||||||||    
T  3153 aggatactcgcagaaacctcacaagccatcttta 3186  T

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Target: scaffold0201 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 13783 - 13706
Alignment:
Q  75 gaaaaaatatgatgtgtttcttagctttcgaggtgaggatactcgcagaaacttcacaagccatctttatgattctct 152  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||    
T  13783 gaaaaaatatgatgtttttcttagctttcgaggtgaggatattcgcagaaacttcagaagccatctttatgatgctct 13706  T

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Target: scaffold0201; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 13667 - 13608
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatg 226  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13667 agcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatg 13608  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 12894523 - 12894595
Alignment:
Q  75 gaaaaaatatgatgtgtttcttagctttcgaggtgaggatactcgcagaaacttcacaagccatctttatgat 147  Q
    |||||| | |||||| ||| | |||||||| |||||||||||||| |||| ||||||||| ||||||||||||    
T  12894523 gaaaaagtctgatgtttttataagctttcgcggtgaggatactcgtagaagcttcacaagtcatctttatgat 12894595  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 12894636 - 12894691
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtca 222  Q
    |||||||||||||||||||||| ||  ||||| | |||||||||||||||||||||    
T  12894636 agcttcaaaaaggagatgagatatcctcagcattgatcaaagccattgaggagtca 12894691  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 16124973 - 16124918
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtca 222  Q
    ||||| |||||||||||||||||||  ||||||| |||||||||||||| ||||||    
T  16124973 agcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtca 16124918  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 16127126 - 16127071
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtca 222  Q
    ||||| |||||||||||||||||||  ||||||| |||||||||||||| ||||||    
T  16127126 agcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtca 16127071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 16334678 - 16334733
Alignment:
Q  167 agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtca 222  Q
    ||||| |||||||||||||||||||  ||||||| |||||||||||||| ||||||    
T  16334678 agcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtca 16334733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 16125080 - 16125018
Alignment:
Q  84 tgatgtgtttcttagctttcgaggtgaggatactcgcagaaacttcacaagccatctttatga 146  Q
    |||||| ||| |||||||||| ||||| |||||||| ||||| ||||||||||||||| ||||    
T  16125080 tgatgtttttattagctttcgtggtgatgatactcgtagaaaattcacaagccatcttaatga 16125018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 16127233 - 16127171
Alignment:
Q  84 tgatgtgtttcttagctttcgaggtgaggatactcgcagaaacttcacaagccatctttatga 146  Q
    |||||| ||| |||||||||| ||||| |||||||| ||||| ||||||||||||||| ||||    
T  16127233 tgatgtttttattagctttcgtggtgatgatactcgtagaaaattcacaagccatcttaatga 16127171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 16334571 - 16334633
Alignment:
Q  84 tgatgtgtttcttagctttcgaggtgaggatactcgcagaaacttcacaagccatctttatga 146  Q
    |||||| ||| |||||||||| ||||| |||||||| ||||| ||||||||||||||| ||||    
T  16334571 tgatgtttttattagctttcgtggtgatgatactcgtagaaaattcacaagccatcttaatga 16334633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 28491818 - 28491780
Alignment:
Q  82 tatgatgtgtttcttagctttcgaggtgaggatactcgc 120  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  28491818 tatgatgtgttccttagctttcgaggtgaggatactcgc 28491780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 29804228 - 29804190
Alignment:
Q  82 tatgatgtgtttcttagctttcgaggtgaggatactcgc 120  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  29804228 tatgatgtgttccttagctttcgaggtgaggatactcgc 29804190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 29733346 - 29733309
Alignment:
Q  82 tatgatgtgtttcttagctttcgaggtgaggatactcg 119  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  29733346 tatgatgtttttctcagctttcgaggtgaggatactcg 29733309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 16466351 - 16466298
Alignment:
Q  88 gtgtttcttagctttcgaggtgaggatactcgcagaaacttcacaagccatctt 141  Q
    |||||| |||| ||| ||||||||||||||||||  || |||||||||||||||    
T  16466351 gtgtttattagttttagaggtgaggatactcgcaacaatttcacaagccatctt 16466298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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