View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_low_35 (Length: 217)
Name: NF13427_low_35
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 42294969 - 42294772
Alignment:
| Q |
1 |
aaggcttcggtttagcataggttaagcaaggccggcaggagcatacatgattggtagtaaaccaaccagaatcgaaaccgacagtggagcaacacgacga |
100 |
Q |
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| T |
42294969 |
aaggcttcggttgagcataggttaagcaaggccggcaggagcatacatgattggtagtaaaccaaccagaatcgaaaccggcagtggagcaacacgacga |
42294870 |
T |
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| Q |
101 |
accaagaactaataacctcaaacaaatccaacacaaactgaataaaggcacatagtagaatagtttgcacaagtttagagcaccaacaatcagctaac |
198 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||| |
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| T |
42294869 |
accaagaactaataacctcaaacaaatccaacacaacccgaataaaggcacataacagcatagtttgcacaagtttagagcaccaacaataagctaac |
42294772 |
T |
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