View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13427_low_36 (Length: 210)
Name: NF13427_low_36
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_low_36 |
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| [»] scaffold1176 (2 HSPs) |
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| [»] scaffold0902 (2 HSPs) |
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| [»] scaffold1652 (2 HSPs) |
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| [»] scaffold1801 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 8e-94; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 14248334 - 14248153
Alignment:
| Q |
19 |
caactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtcc |
118 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248334 |
caactctccatcatctcctcctcaagctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtcc |
14248235 |
T |
|
| Q |
119 |
acaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14248234 |
acaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggtttttgttgctgctttgatgatgt |
14248153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 14316869 - 14316691
Alignment:
| Q |
19 |
caactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtcc |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||| || || |||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
14316869 |
caactctccatcatctcctcctcaagcttcccccgcagccactccggccatcactccatcatcgatctctacccctccttctaaagcaccatcaacgtcc |
14316770 |
T |
|
| Q |
119 |
acaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt |
200 |
Q |
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|| || || ||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
14316769 |
acgaa---cgacgccgctttgaacagatttacccttgccggatctgctgctgtcgtggttttcgctgctgctttgatgatgt |
14316691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 36 - 200
Target Start/End: Complemental strand, 14254124 - 14253963
Alignment:
| Q |
36 |
ctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacgccgccgccgc |
135 |
Q |
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||||||| |||| || ||||| |||||||| |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| |||||| |
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| T |
14254124 |
ctcctcaagcttcacctgcagctactcctgctattactccatcgtcgatctctatccctccatctaaagtaccatcaacgtccacaaacgacgccgc--- |
14254028 |
T |
|
| Q |
136 |
tttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt |
200 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
14254027 |
tttgaacagatttacagttgctggatctgctgctgtcgtggttttcgctgctgctttgatgatgt |
14253963 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 36 - 200
Target Start/End: Original strand, 277 - 441
Alignment:
| Q |
36 |
ctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacgccgccgccgc |
135 |
Q |
| |
|
||||||| |||| |||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
277 |
ctcctcaagcttcccccgcagccacccctgctattactccatcgtccatctctacccctccatctaaagcaccatcaacgtccacaaacgacgccgccgc |
376 |
T |
|
| Q |
136 |
tttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
377 |
tttgaacagatttacagttgccggatctactgctgtcgtggttttcattgctgctttgatgatgt |
441 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 1380 - 1478
Alignment:
| Q |
19 |
caactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctcta-cccctccatctaaagcaccatcaacgtc |
117 |
Q |
| |
|
||||| |||| |||||||||||||||||| ||||||| | |||| || | |||| ||||| | ||||||| |||||||||||||||||| ||||||||| |
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|
| T |
1380 |
caactgtccaccatctcctcctcatgcttcccccgcaacagctccggctaatact-catcgtcaatctctaccccctccatctaaagcacaatcaacgtc |
1478 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 3390 - 3209
Alignment:
| Q |
19 |
caactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtcc |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | |
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|
| T |
3390 |
caactctccaccatctcctcctcatgcttccccagcagccgctcctgccattactccatcggcgatctctacccctccatctaaagcaccatcaacattc |
3291 |
T |
|
| Q |
119 |
acaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt |
200 |
Q |
| |
|
|||||||| | | |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
3290 |
acaaacgctggcaccgctttgaacagatttacagttgccggatctgctgctgtcgtggttttcacggctgctttgatgatgt |
3209 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 3536 - 3483
Alignment:
| Q |
56 |
gccactcctgcaattactccatcggcgatctctacccctccatctaaagcacca |
109 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
3536 |
gccactcctgctgtgactccatcgtcgatctctactcctccatctcaagcacca |
3483 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 36 - 200
Target Start/End: Original strand, 496 - 660
Alignment:
| Q |
36 |
ctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacgccgccgccgc |
135 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || | |
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|
| T |
496 |
ctcctcaagcttcccccgcagccactcctgctattactccatcggcgatctctaccccaccatctaaagcaccatcaacgtccacaaacgctgccaccac |
595 |
T |
|
| Q |
136 |
tttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
596 |
tttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgt |
660 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 277 - 316
Alignment:
| Q |
72 |
ctccatcggcgatctctacccctccatctaaagcaccatc |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
277 |
ctccatcgtcgatctctacccctccatctcaagcaccatc |
316 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1801 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold1801
Description:
Target: scaffold1801; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 147 - 337
Alignment:
| Q |
19 |
caactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatca------ |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
147 |
caactctccacaatctcctcctcatgcttcgccagcagctgctcctgccattactccatcgtcgatctctacccctccatctaaagcatcatcaacatca |
246 |
T |
|
| Q |
113 |
---acgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt |
200 |
Q |
| |
|
|| ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| |
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|
| T |
247 |
cagacatccacaaacgctgctgccgctttgaacagatttacagttgccggatctgctgctgtcgtccttttaactgctgctttgatgatgt |
337 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 37245021 - 37244886
Alignment:
| Q |
60 |
ctcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccgg |
159 |
Q |
| |
|
||||||| ||||||||| || | ||||||||||||||||||||| |||||||||| |||||||| || ||||||||| |||||||| || |||||||| |
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|
| T |
37245021 |
ctcctgctattactccaacgtctatctctacccctccatctaaatcaccatcaacatccacaaa---cggcgccgctttcaacagattcactgttgccgg |
37244925 |
T |
|
| Q |
160 |
atctactgctgtcgtggttttcgttgctgctttgatgat |
198 |
Q |
| |
|
|||| ||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
37244924 |
atctgctgctgttgtggttttcgctgctgttttgatgat |
37244886 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 37253011 - 37252947
Alignment:
| Q |
131 |
gccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgat |
195 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||| |||||||||| || |||||||| |
|
|
| T |
37253011 |
gccgctttgaacagatttaccgttgccggatctgctgctgtagtggttttcgccgccgctttgat |
37252947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 37232766 - 37232696
Alignment:
| Q |
130 |
cgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt |
200 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||| ||||||| ||| |||||| ||| ||||||||||||| |
|
|
| T |
37232766 |
cgccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgt |
37232696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 37257141 - 37257067
Alignment:
| Q |
126 |
ccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt |
200 |
Q |
| |
|
||||||||||||| |||||||| || ||||| |||||| ||||||| ||||||||| |||||||||||||||| |
|
|
| T |
37257141 |
ccgccgccgcttttaacagattcaccgttgctggatctgctgctgttatggttttcgccgctgctttgatgatgt |
37257067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 37241927 - 37241876
Alignment:
| Q |
74 |
ccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacg |
125 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||||||||||||| ||||||||| |
|
|
| T |
37241927 |
ccatcgtcgatctctactcctccaactaaagcaccatcaacgcccacaaacg |
37241876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 37242001 - 37241923
Alignment:
| Q |
33 |
ctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatc |
111 |
Q |
| |
|
|||||||||| || | ||| || ||| ||||||| |||||||||||| | |||||||| |||||| ||||||||||||| |
|
|
| T |
37242001 |
ctcctcctcacgcctcccctgctgccgctcctgctattactccatcgtcaatctctactcctccaactaaagcaccatc |
37241923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 37245169 - 37245128
Alignment:
| Q |
71 |
actccatcggcgatctctacccctccatctaaagcaccatca |
112 |
Q |
| |
|
||||||||| |||||||||| ||||||||| ||||||||||| |
|
|
| T |
37245169 |
actccatcgtcgatctctactcctccatctcaagcaccatca |
37245128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 37242163 - 37242111
Alignment:
| Q |
60 |
ctcctgcaattactccatcggcgatctctacccctccatctaaagcaccatca |
112 |
Q |
| |
|
|||||||| ||||||||| | ||||||| || ||||||||| ||||||||||| |
|
|
| T |
37242163 |
ctcctgcagttactccattgtcgatctcaactcctccatctcaagcaccatca |
37242111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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