View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_low_5 (Length: 575)
Name: NF13427_low_5
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 24728319 - 24728095
Alignment:
| Q |
23 |
agcagcccaatcacgttgattttcttccgataaaagcttccttggaagcaaatctgcccaagccgattcatcggttggtgtcaaatgatagtgagacatc |
122 |
Q |
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| T |
24728319 |
agcagcccagtcacgttggttttcttccgataaaagcttccttggaagcaaatctgcccaagccgattcatcagttggtgtcaaatgatagtgagacatc |
24728220 |
T |
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| Q |
123 |
acttctttcttccatgtttcattctttgatgcccatagctcgtaccgaaacgtatgtgattgaggaagattgttcatgcattctttgccagcaacacaac |
222 |
Q |
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| T |
24728219 |
acttctttcttccatgtttcattctttgatgcccacagctcgtaccgaaatgtatgtgattgaggaagattgttcatgcattctttgccagcaacacaac |
24728120 |
T |
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| Q |
223 |
caaacagcataatggccataaacat |
247 |
Q |
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| T |
24728119 |
caaacagcataatggccataaacat |
24728095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 434 - 550
Target Start/End: Complemental strand, 24727914 - 24727798
Alignment:
| Q |
434 |
aattggaagttcaatgtaaaaacaaaatcgtattaaagaaagaagaaactttatcaaagaatggaggattgtcaaataaggtaaataagctaaacttgaa |
533 |
Q |
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| T |
24727914 |
aattggaagttcaatgtaaaaacaaaatcgtattaaagaaagaagaaactttatcaaagaatggaggattgtcaaataaggtaaataagctaaacttgaa |
24727815 |
T |
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| Q |
534 |
ttaaatgattttttttt |
550 |
Q |
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| T |
24727814 |
ttaaatgattttttttt |
24727798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 24688809 - 24688588
Alignment:
| Q |
26 |
agcccaatcacgttgattttcttccgataaaagcttccttggaagcaaatctgcccaagccgattcatcggttggtgtcaaatgatagtgagacatcact |
125 |
Q |
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| T |
24688809 |
agcccaatcatgttggttttcttctgataagatcttccttggaagcaaagttgcccaagcagattcatcagttggtgtcacatgataatgagacatcact |
24688710 |
T |
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| Q |
126 |
tctttcttccatgtttcattctttgatgcccatagctcgtaccgaaacgtatgtgattgaggaagattgttcatgcattctttgccagcaacacaaccaa |
225 |
Q |
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| T |
24688709 |
tctttcttccatgtctcattctttgatgcaaatagctcataccgaaacgtatgtgactgagtcggaatgttagtgcattccttaatagtaacacaaccac |
24688610 |
T |
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| Q |
226 |
acagcataatggccataaacat |
247 |
Q |
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| T |
24688609 |
gcagcataagtgccataaacat |
24688588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 383 - 442
Target Start/End: Complemental strand, 24688430 - 24688371
Alignment:
| Q |
383 |
aaatgattgtaattgcaagccagcccagaaatttatatctcaactaaattaaattggaag |
442 |
Q |
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| T |
24688430 |
aaatgaatgtaaatgcaacccaacccagaaatttatatctcaactaaattaaattggaag |
24688371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 24719022 - 24718986
Alignment:
| Q |
119 |
catcacttctttcttccatgtttcattctttgatgcc |
155 |
Q |
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| T |
24719022 |
catcacttctttcttccatgtctcattctttgatgcc |
24718986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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