View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_low_6 (Length: 569)
Name: NF13427_low_6
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 14 - 569
Target Start/End: Original strand, 36411565 - 36412120
Alignment:
| Q |
14 |
atcatcatcaccagagataaaccacgcaaagctcaaccagatcaaagagtctgagtcttctgacactatccaaactccatcttcagcttctttttcaatt |
113 |
Q |
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| T |
36411565 |
atcatcatcaccagagataaaccacgcaaagctcaaccagatcaaagagtctgagtcttctgacactatccaaactccatcttcagcttctttttcaatt |
36411664 |
T |
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| Q |
114 |
acaccaatagcaaggcataccaacaggcacaaaagcagtgacagcttttcatggttgaattccgaaagtatgcatctttgcaccgaaggtcttggttttg |
213 |
Q |
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| T |
36411665 |
acaccaatagcaaggcataccaacaggcacaaaagcagtgacagcttttcatggttgaattccgaaagtatgcatctttgcaccgaaggtcttggttttg |
36411764 |
T |
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| Q |
214 |
agagttcagacgatgtcgaggactcaaagagtggagcgaatgaatctttacaaattgatcaaaatgagaaacgtgtcgaacatcatttatcttcaagaca |
313 |
Q |
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| T |
36411765 |
agagttcagacgatgtcgaggactcaaagagtggagcgaatgaatctttacaaattgatcaaaatgagaaacgtgtcgaacatcatttatcttcaagaca |
36411864 |
T |
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| Q |
314 |
tcattcttatggagaatgtaggaggttaagggttagtgagtaccctcctcccatttcaagcatagggaggactgggaagccttgggtttatttcaggtct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36411865 |
tcattcttatggagaatgtaggaggttaagggttagtgagtaccctcctcccatttcaagcatagggaggactgggaagccttgggtttatttcaggtct |
36411964 |
T |
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| Q |
414 |
attaggaataatggaagatttgtccttgaagaggtaaggataccaacacaggaggtcttgcgtgcttatagagaggatggaaggctcaagctgcagtttg |
513 |
Q |
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| T |
36411965 |
attaggaataatggaagatttgtccttgaagaggtaaggatacccacacaggaggtcttgcgtgcttatagagaggatggaaggctcaagctgcagtttg |
36412064 |
T |
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| Q |
514 |
ttcagcctcccgaggatgagtttctggaagaggatgaagaagagaatgatatagga |
569 |
Q |
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| T |
36412065 |
ttcagcctcccgaggatgagtttctggaagaggatgaagaagagaatgatatagga |
36412120 |
T |
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