View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13428_low_1 (Length: 444)
Name: NF13428_low_1
Description: NF13428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13428_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 81 - 428
Target Start/End: Original strand, 47909030 - 47909377
Alignment:
| Q |
81 |
taacatgctgcaagttcaaggacaataacgaggttgtcgtccggcccctccaaagaagaacacagggtcttttccatatggagcaatatttagggcactg |
180 |
Q |
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| T |
47909030 |
taacatgctgcaagttcaaggacaataacgaggttgtcgtccggcccctccaaagaagaacacagggtcttttccatatggagcaatatttagggcactg |
47909129 |
T |
|
| Q |
181 |
taacactcaggctctccagcatgtgtggttacgaattgtgggtacttaagagcttgtgagtaatctttaattctcacagcgcccatatagcatgcgtgct |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47909130 |
taacactcaggctctccagcatgtgtggttacgaattgtgggtacttaagagcttgtgagtaatctttaattctcactgcgcccatatagcatgcgtgct |
47909229 |
T |
|
| Q |
281 |
tatatttattatatgcttcttctccactccccatttgtgttcctgtgtgaggaggttttgttttaaccgcataactaaacacttgtccaccccattgaac |
380 |
Q |
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| T |
47909230 |
tatatttattatatgcttcttctccactccccatttgtgttcctgtgtgaggaggttttgttttaaccgcataactaaatacttgtccaccccattgaac |
47909329 |
T |
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| Q |
381 |
cgtcgttgcactgtgtttcaaattaccaaataactcagctggccaata |
428 |
Q |
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| T |
47909330 |
cgtcgttgcactgtgtttcaaattaccaaataactcagctggccaata |
47909377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 127 - 428
Target Start/End: Original strand, 47928004 - 47928305
Alignment:
| Q |
127 |
cctccaaagaagaacacagggtcttttccatatggagcaatatttagggcactgtaacactcaggctctccagcatgtgtggttacgaattgtgggtact |
226 |
Q |
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| T |
47928004 |
cctccaaagtagaatacaggatcttttccatatggagcgtcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatact |
47928103 |
T |
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| Q |
227 |
taagagcttgtgagtaatctttaattctcacagcgcccatatagcatgcgtgcttatatttattatatgcttcttctccactccccatttgtgttcctgt |
326 |
Q |
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| T |
47928104 |
taagagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcatctccactacccatctgtgttcctgt |
47928203 |
T |
|
| Q |
327 |
gtgaggaggttttgttttaaccgcataactaaacacttgtccaccccattgaaccgtcgttgcactgtgtttcaaattaccaaataactcagctggccaa |
426 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||| | |||||||| |||||||| ||||||||| |
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| T |
47928204 |
gtgaggaggttttgttttgacctcataactaaacacttgtccaccccattgaatcaatgttgcactgtgtcttaaattacctaataactctgctggccaa |
47928303 |
T |
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| Q |
427 |
ta |
428 |
Q |
| |
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|| |
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|
| T |
47928304 |
ta |
47928305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 94 - 381
Target Start/End: Original strand, 47918209 - 47918493
Alignment:
| Q |
94 |
gttcaaggacaataacgaggttgtcgtccggcccctccaaagaagaacacagggtcttttccatatggagcaatatttagggcactgtaacactcaggct |
193 |
Q |
| |
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||||||||||||| | |||| |||||| || |||||||| |||| ||||| |||||||||||||||||| ||| | |||||||||||| | || | |
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| T |
47918209 |
gttcaaggacaatgaggaggccttcgtccagcacctccaaaatagaatacaggatcttttccatatggagcatcattgaaggcactgtaacaatatggtt |
47918308 |
T |
|
| Q |
194 |
ctccagcatgtgtggttacgaattgtgggtacttaagagcttgtgagtaatctttaattctcacagcgcccatatagcatgcgtgcttatatttattata |
293 |
Q |
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| T |
47918309 |
ctatagcatgtgtacttacaaatgatgggtacttaagtgcttgcgaattatctttgattctcacaccacccatgtaacatgcaaccccaaatttattata |
47918408 |
T |
|
| Q |
294 |
tgcttcttctccactccccatttgtgttcctgtgtgaggaggttttgttttaaccgcataactaaacacttgtccaccccattgaacc |
381 |
Q |
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| T |
47918409 |
tgcttcttctccactacccatttgtgttccagtgtgaggag---tttttttgacctcataactaaacacttgtccaccccattgaacc |
47918493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 294 - 428
Target Start/End: Original strand, 47935605 - 47935739
Alignment:
| Q |
294 |
tgcttcttctccactccccatttgtgttcctgtgtgaggaggttttgttttaaccgcataactaaacacttgtccaccccattgaaccgtcgttgcactg |
393 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||| | ||||| ||| |||||||||||||||||| |||||||||||| ||||||||| |
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| T |
47935605 |
tgcttcttctccactacccatctgtgttcctgtgtgaggaggggtagttttgacctgataactaaacacttgtcctccccattgaaccaatgttgcactg |
47935704 |
T |
|
| Q |
394 |
tgtttcaaattaccaaataactcagctggccaata |
428 |
Q |
| |
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||| | |||||||| ||||| || ||||||||||| |
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| T |
47935705 |
tgtcttaaattacccaataattccgctggccaata |
47935739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 93 - 381
Target Start/End: Original strand, 47946546 - 47946834
Alignment:
| Q |
93 |
agttcaaggacaataacgaggttgtcgtccggcccctccaaagaagaacacagggtcttttccatatggagcaatatttagggcactgtaacactcaggc |
192 |
Q |
| |
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||||||||||||||| ||||| ||| || | |||||||| ||||| ||||| |||||||||||| || || || |||||||||||||| | ||| |
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| T |
47946546 |
agttcaaggacaatatggaggtcttcgcccaggtcctccaaaaaagaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggt |
47946645 |
T |
|
| Q |
193 |
tctccagcatgtgtggttacgaattgtgggtacttaagagcttgtgagtaatctttaattctcacagcgcccatatagcatgcgtgcttatatttattat |
292 |
Q |
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||| | |||| ||| |||| |||||||| ||||| |||| || ||| ||||| |||||||||||| ||| || |||||| | | || | | |
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| T |
47946646 |
tctgctgcatatgtacttacaaattgtggatacttgagagtttctgaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccac |
47946745 |
T |
|
| Q |
293 |
atgcttcttctccactccccatttgtgttcctgtgtgaggaggttttgttttaaccgcataactaaacacttgtccaccccattgaacc |
381 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| |
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| T |
47946746 |
ttgctgcttctccactacccatttgtgttcctgtgtgaggaggggttgttttcacattataactaaacacttgtccaccccattgaacc |
47946834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 47908962 - 47909015
Alignment:
| Q |
1 |
acatagatctttattatttatcaaacatgtttatgcatccaatatgcaatacaa |
54 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47908962 |
acatagatctttattatttatcaaacatgtttatgcatccaatatgcaatacaa |
47909015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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