View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13428_low_2 (Length: 299)

Name: NF13428_low_2
Description: NF13428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13428_low_2
NF13428_low_2
[»] chr3 (1 HSPs)
chr3 (21-291)||(45811136-45811406)
[»] chr2 (9 HSPs)
chr2 (20-291)||(1398648-1398919)
chr2 (30-291)||(1402341-1402602)
chr2 (21-127)||(409121-409227)
chr2 (20-127)||(997464-997571)
chr2 (52-162)||(966206-966316)
chr2 (51-151)||(820446-820546)
chr2 (21-118)||(958457-958556)
chr2 (240-275)||(975467-975502)
chr2 (20-67)||(1013173-1013220)
[»] chr7 (3 HSPs)
chr7 (35-142)||(12094097-12094204)
chr7 (35-120)||(12104437-12104522)
chr7 (35-120)||(1446684-1446769)
[»] chr4 (1 HSPs)
chr4 (42-70)||(40639854-40639882)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 21 - 291
Target Start/End: Complemental strand, 45811406 - 45811136
Alignment:
Q  21 gatagaatcggaactttaccagacgagattctgattcacattctctcattcgttcccaccaaacaagccttcaccacatccattctctcaaagcgatgga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45811406 gatagaatcggaactttaccagacgagattctgattcacattctctcattcgttcccaccaaacaagccttcaccacatccattctctcaaagcgatgga 45811307  T
Q  121 ttcatctttggcgttacgttccgattctcgatttcaccgaaaccaatttggaagatcgagattccgtcatccgtttcgaagaattcattttttccgtcat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45811306 ttcatctttggcgttacgttccgattctcgatttcaccgaaaccaatttggaagatcgagattccgtcatccgcttcgaagaattcattttttccgtcat 45811207  T
Q  221 ccgctcacgacattccgtcggtaatcattccatcaacactttcatcctcgacattcaacgccattcatctc 291  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45811206 ccgctcacgacattccgccggtaatcattccatcaacactttcatcctcgacattcagcgccattcatctc 45811136  T

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Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 1398648 - 1398919
Alignment:
Q  20 ggatagaatcggaactttaccagacgagattctgattcacattctctcattcgttcccaccaaacaagccttcaccacatccattctctcaaagcgatgg 119  Q
    |||||| || |||| |||||||||||| ||||||| || ||| ||||| |  |||||||||||||||||| |  ||||||||||||| ||||||| ||||    
T  1398648 ggataggataggaagtttaccagacgatattctgactcgcatactctcttctgttcccaccaaacaagccgtagccacatccattctttcaaagcaatgg 1398747  T
Q  120 attcatctttggcgttacgttccgattctcgatttcaccgaaaccaatttggaagatcgagattccgtcatccgtttcgaagaattcattttttccgtca 219  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||| |||||||| | ||| ||| |   ||| ||| | |||||| | | |||||||     
T  1398748 attcatctttggcgttacgttcccgttctcgacttcaccgaaaccaacttggaagacctagaatccattcgccgcttcaaggaattcgtctcttccgtct 1398847  T
Q  220 tccgctcacgacattccgtcggtaatcattccatcaacactttcatcctcgacattcaacgccattcatctc 291  Q
    | | ||| ||| |  |||  ||||||||||||||||||||||||||||||| |||||||||| |||| ||||    
T  1398848 tgctctcgcgaaaagccgcaggtaatcattccatcaacactttcatcctcggcattcaacgctattcctctc 1398919  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 30 - 291
Target Start/End: Original strand, 1402341 - 1402602
Alignment:
Q  30 ggaactttaccagacgagattctgattcacattctctcattcgttcccaccaaacaagccttcaccacatccattctctcaaagcgatggattcatcttt 129  Q
    |||| |||||||||||| ||||||| || ||| ||||| |  |||||||||||||||||| |  ||||||||||||| || |||||||||||||||||||    
T  1402341 ggaagtttaccagacgatattctgactcgcatactctcttctgttcccaccaaacaagccgtagccacatccattctttcgaagcgatggattcatcttt 1402440  T
Q  130 ggcgttacgttccgattctcgatttcaccgaaaccaatttggaagatcgagattccgtcatccgtttcgaagaattcattttttccgtcatccgctcacg 229  Q
    |||||||||||||  ||||||| ||||| ||||||||  ||||||| | ||| |||||   ||| ||| | |||||| ||| |||| || | | ||  ||    
T  1402441 ggcgttacgttcccgttctcgacttcacagaaaccaacatggaagacctagaatccgttcgccgcttcaaggaattcgtttcttccttcttgctcttgcg 1402540  T
Q  230 acattccgtcggtaatcattccatcaacactttcatcctcgacattcaacgccattcatctc 291  Q
    | |  |||  ||||||||||||||||||||||||||||||| |||||||||| |||| ||||    
T  1402541 aaaagccgcaggtaatcattccatcaacactttcatcctcggcattcaacgctattcctctc 1402602  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 409121 - 409227
Alignment:
Q  21 gatagaatcggaactttaccagacgagattctgattcacattctctcattcgttcccaccaaacaagccttcaccacatccattctctcaaagcgatgga 120  Q
    ||||| || |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||   |||||||||||| |||||| ||||||    
T  409121 gataggattggaagtttaccagacgagattctgattcacattctctcttttgttcccaccaaacaagcctttgtcacatccattctttcaaagagatgga 409220  T
Q  121 ttcatct 127  Q
     ||||||    
T  409221 ctcatct 409227  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 997571 - 997464
Alignment:
Q  20 ggatagaatcggaactttaccagacgagattctgattcacattctctcattcgttcccaccaaacaagccttcaccacatccattctctcaaagcgatgg 119  Q
    |||||| ||||||| |||||| |||||||| || || ||||||||||| || ||||||||||||||||||||| | || |||||||| ||||||||||||    
T  997571 ggataggatcggaagtttaccggacgagatcctaatccacattctctcttttgttcccaccaaacaagccttcgcaacttccattctttcaaagcgatgg 997472  T
Q  120 attcatct 127  Q
    ||| ||||    
T  997471 attaatct 997464  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 966316 - 966206
Alignment:
Q  52 tgattcacattctctcattcgttcccaccaaacaagccttcaccacatccattctctcaaagcgatggattcatctttggcgttacgttccgattctcga 151  Q
    |||||||| ||||||| || |||||||||||| ||||  |  ||||||||||||| |||||||||||||||||||||||| |||||| |||  ||||| |    
T  966316 tgattcacgttctctcttttgttcccaccaaaaaagcggtagccacatccattctttcaaagcgatggattcatctttggtgttacgctcccgttctcaa 966217  T
Q  152 tttcaccgaaa 162  Q
     ||||||||||    
T  966216 cttcaccgaaa 966206  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 151
Target Start/End: Original strand, 820446 - 820546
Alignment:
Q  51 ctgattcacattctctcattcgttcccaccaaacaagccttcaccacatccattctctcaaagcgatggattcatctttggcgttacgttccgattctcg 150  Q
    |||||||| |||||||| |  ||||| ||||||||||||||   ||| |||||||| |||||||||||||||||||| |||| |||||||||  ||||||    
T  820446 ctgattcatattctctcttctgttcctaccaaacaagcctttgtcacttccattctttcaaagcgatggattcatctatggctttacgttcctgttctcg 820545  T
Q  151 a 151  Q
    |    
T  820546 a 820546  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 958556 - 958457
Alignment:
Q  21 gatagaatcggaactttaccagacgagattctgattcacattctctcattcgttcccacc--aaacaagccttcaccacatccattctctcaaagcgatg 118  Q
    ||||| ||||||| |||  | |||||||||||||||||||||||||| || |||||||||  ||||||||| |  ||||||||||||| |||||||||||    
T  958556 gataggatcggaagtttggcggacgagattctgattcacattctctcttttgttcccaccaaaaacaagccgtagccacatccattctttcaaagcgatg 958457  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 975502 - 975467
Alignment:
Q  240 ggtaatcattccatcaacactttcatcctcgacatt 275  Q
    ||||||||||||||||||||||||||||| ||||||    
T  975502 ggtaatcattccatcaacactttcatccttgacatt 975467  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 1013220 - 1013173
Alignment:
Q  20 ggatagaatcggaactttaccagacgagattctgattcacattctctc 67  Q
    |||||||||| | | ||||||||||| |||||||||||||||||||||    
T  1013220 ggatagaatcagcaatttaccagacgggattctgattcacattctctc 1013173  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 12094097 - 12094204
Alignment:
Q  35 tttaccagacgagattctgattcacattctctcattcgttcccaccaaacaagccttcaccacatccattctctcaaagcgatggattcatctttggcgt 134  Q
    |||||||||||| || |||||||||||||| || |   |||||||||||||||||||   ||| || ||||| |||||| ||||||  ||||| ||| ||    
T  12094097 tttaccagacgatatcctgattcacattctgtcttcttttcccaccaaacaagcctttgtcacttcaattctttcaaagagatggaagcatctatggtgt 12094196  T
Q  135 tacgttcc 142  Q
    ||||||||    
T  12094197 tacgttcc 12094204  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 12104437 - 12104522
Alignment:
Q  35 tttaccagacgagattctgattcacattctctcattcgttcccaccaaacaagccttcaccacatccattctctcaaagcgatgga 120  Q
    |||| ||||||| || ||||||||||||||||| ||  |||||||||||||||||||   ||| || ||||| |||||| ||||||    
T  12104437 tttatcagacgatatcctgattcacattctctcttttcttcccaccaaacaagcctttctcacttcaattctttcaaagagatgga 12104522  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 1446769 - 1446684
Alignment:
Q  35 tttaccagacgagattctgattcacattctctcattcgttcccaccaaacaagccttcaccacatccattctctcaaagcgatgga 120  Q
    |||||||||||| || || ||||| |||||||| |   |||||||||||||||||||   ||| |||||||| |||||| ||||||    
T  1446769 tttaccagacgatatcctaattcaaattctctcttctcttcccaccaaacaagcctttctcacttccattctttcaaagagatgga 1446684  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 40639854 - 40639882
Alignment:
Q  42 gacgagattctgattcacattctctcatt 70  Q
    |||||||||||||||||||||||||||||    
T  40639854 gacgagattctgattcacattctctcatt 40639882  T

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