View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13429_high_11 (Length: 410)
Name: NF13429_high_11
Description: NF13429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13429_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 55377287 - 55377692
Alignment:
| Q |
18 |
ttaattacctgagaggcatagggccaaggtggtgagttttcagattcagcaggagcaacatcaaatttgaaatcaaggagtgccgttgaagaagacaaaa |
117 |
Q |
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| T |
55377287 |
ttaattacctgagaggcatagggccaaggtggtgagttttcagattcagcaggagcaacatcaaatttgaaatcaaggagtgccgttgaagaagacaaaa |
55377386 |
T |
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| Q |
118 |
tacagtgtcttgttgtagttgttttgggtgctgcatcaaaaagaaaagagtgaggtgagaaatgagnnnnnnnnnnnnnnnnnnngagaattgtttatgc |
217 |
Q |
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| T |
55377387 |
tacagtgtcttgttgtagttgttttgggtgctgcatcaaaaagaaaagagtgaggtgagaaatgagaatataatataatataatagagaattgtttatgc |
55377486 |
T |
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| Q |
218 |
atacactgaagaagaaaga---------gatgatgatgatgatggcggtgggtagggatcctgatgaaagtgtctgggttgcagatgaattgtggcaata |
308 |
Q |
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| T |
55377487 |
atacactgaagaagaaagagatgatgatgatgatgatgatgatgccggtgggtagggattctgatgaaagtgtctgggttgcagatgaattgtggcaata |
55377586 |
T |
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| Q |
309 |
aacacgacgacgatgatgaccacattatcctttctccaaaaaataagagtt----accaactaactactaactaacttcatttcattcaagggtacgctt |
404 |
Q |
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| T |
55377587 |
aacacgacgacgatgatgaccacattatcctttctccaaaaaataagagttactaactaactaactactaactaacttcatttcattcaagggtacgctt |
55377686 |
T |
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| Q |
405 |
catctc |
410 |
Q |
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| T |
55377687 |
cttctc |
55377692 |
T |
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