View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13429_high_2 (Length: 647)
Name: NF13429_high_2
Description: NF13429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13429_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 294 - 632
Target Start/End: Complemental strand, 44853370 - 44853033
Alignment:
| Q |
294 |
agctaatctctacttcacacgttatactcaagttttaaaaaattcaatgatatagactctctgattataatgcattttccagatttacaatatcatgttt |
393 |
Q |
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| T |
44853370 |
agctaatctctacttcacacgttatactcaagttttaaaaaattcaatgatatagactctctgattataatgcattttccagatttacaatatcatgttt |
44853271 |
T |
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| Q |
394 |
cnnnnnnngtcaagactttgttggattggattgagatttatagtttcattaaagtgannnnnnngctttctacatcaatataggaaatttatgtatgaaa |
493 |
Q |
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| T |
44853270 |
ctttttt-gtcaagactttgttggattggattgagatttatagtttcattaaagtgatttttttgctttctacatcaatataggaaatttatgtatgaaa |
44853172 |
T |
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| Q |
494 |
ctaattacattataatttgtagtgctactaagagctacaagctgtaaaatgttttgcatggatactcattctcatgtgttgagctgaattggatcccctg |
593 |
Q |
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| T |
44853171 |
ctaattacattataatttgtagtgctactaagagctacaagctgtaaaatgttttgcatggatactcattctcatgtgttgagctgaattggatcccctg |
44853072 |
T |
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| Q |
594 |
gtatatatagcgaatgttttttaagttttacattttctt |
632 |
Q |
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| T |
44853071 |
gtatatatagcgaatgttttttaagttttacattttctt |
44853033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 44853692 - 44853421
Alignment:
| Q |
19 |
ggtgctgtatacatcaagggtgttgctgtaacaaattataaaaggtgaggccaatggagtgtcgttaagctcggttacacccgacacttctgattgaaaa |
118 |
Q |
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| T |
44853692 |
ggtgctgtatacatcaagggtgttgctgtaacaaagtataaaaggtgaggccaatggagtgtcgttaagctcggttacacc-gacacttctgattgaaaa |
44853594 |
T |
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| Q |
119 |
tgtgttcgatgtttgacacgtgtcagtgtccaaatgtgaattatattcaattgtatgtatannnnnnnaaaggttcttgctaaccagtgcccggggcact |
218 |
Q |
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| T |
44853593 |
tgtgttcgatgtttgacacatgtcagtgtccaaatgtgaattatattcaattgtatgtatatttttttaaaggttcttgctaaccggtgcccggggcact |
44853494 |
T |
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| Q |
219 |
tgttagcatttccctttaaataattatcactgttgacgttttagggttgtgtctgcgtgtacgtgtcagtgtg |
291 |
Q |
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| T |
44853493 |
tgttagcatttccctttaaataattataagtgttgacgttttagggttgtgtctgcgtgtacgtgtcagtgtg |
44853421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 3026160 - 3026198
Alignment:
| Q |
199 |
taaccagtgcccggggcacttgttagcatttccctttaa |
237 |
Q |
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| T |
3026160 |
taaccagtgcccggggcaccagttagcatttccctttaa |
3026198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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