View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13429_low_1 (Length: 912)
Name: NF13429_low_1
Description: NF13429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13429_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 795; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 795; E-Value: 0
Query Start/End: Original strand, 13 - 891
Target Start/End: Original strand, 279585 - 280479
Alignment:
| Q |
13 |
agcaaaggtgcaagtgaatacaacaggtcatattctttatttatttattaatggattttttacgggtacacaacatggt------------------ttt |
94 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
279585 |
agcaaaggtgcaagtgaatacaacaggtcatattctttatttatttattaatggatttttgacgggtacacaacatggtaccgttagtcaacctggtttt |
279684 |
T |
|
| Q |
95 |
atacatgaagggaacatctctttaaatcaaggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgc |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
279685 |
atacatgaagggaacatctctttaaatcaaggtaccaatattataagtttattaagtgttacagtaggtcatgcaaattacggtgcgttctttgatatgc |
279784 |
T |
|
| Q |
195 |
aagaaactggcattgttgggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgg |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279785 |
aagaaactggcattgttgggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgg |
279884 |
T |
|
| Q |
295 |
gataaatggtatgactaaaaagttctatgatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtat |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
279885 |
gataaatggtatgactaaaaagttctatgatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtat |
279984 |
T |
|
| Q |
395 |
aagactactttcaagacccctgatggtacaaaccccgtagtcttggacttgataggccttcagaaaggagaagcatgggttaatggtcaaagtattggaa |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279985 |
aagactactttcaagacccctgatggtacaaaccccgtagtcttggacttgataggccttcagaaaggagaagcatgggttaatggtcaaagtattggaa |
280084 |
T |
|
| Q |
495 |
ggtattggcctgcaatgcttgctgaaaataaaggatgcagtgacacatgtgattatagaggagaatataatgctgataaatgtttgagtggttgtggaga |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
280085 |
ggtattggcctgcaatgcttgctgaaaataaaggatgcagtgacacatgtgattatagaggagaatataatgctgataaatgtttgagtggttgtggaga |
280184 |
T |
|
| Q |
595 |
accatctcaaaggttttaccatgtgccaaggtcattcttaaatatcgatgtaaacacgttggttttgtttgaggaaatgggttttggtgcaacccctttc |
694 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
280185 |
accatctcaaaggttttaccatgtgccaaggtcattcttaaataatgatgtaaacacgttggttttgtttgaggaaatgggttttgatgcaacccctttc |
280284 |
T |
|
| Q |
695 |
aatgcgtctatccaaacaattaccattggttctatatgtgcaactgcagattatgaaaaaaccctagaattgaaatgccctgagggaaaaactatgtcag |
794 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
280285 |
aatgcgtctgtccaaacaattaccattggttc--tatgtgcaactgcagattatgaaaaaaccctagaattgaaatgccctgagggaaaaactatgtcag |
280382 |
T |
|
| Q |
795 |
aaatccaatttgctagttatggagatccagaaggaagttgtgggttattcaaaataggtgaatgggaatcacgtgatagtaagacagtggttgaaaa |
891 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
280383 |
aaatccaatttgctagttatggagatccagaaggaagttgtgggtcattcaaaataggtgaatgggaatcacgttatagtaagacagtggttgaaaa |
280479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 113 - 502
Target Start/End: Original strand, 290148 - 290537
Alignment:
| Q |
113 |
tctttaaatcaaggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttg |
212 |
Q |
| |
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||||| || |||||| |||||||||||||||| |||||||||||| |||| | |||||| ||| || | |||||||| |||||||||| ||||||| |
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|
| T |
290148 |
tctttgaaacaaggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatgaaagaaactggtattgttg |
290247 |
T |
|
| Q |
213 |
ggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaa |
312 |
Q |
| |
|
| ||||||| |||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| || ||| |
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|
| T |
290248 |
gcggtcctgcgaaactcatttcaactgaatatccaaacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtgtggctag |
290347 |
T |
|
| Q |
313 |
aaagttctatgatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacc |
412 |
Q |
| |
|
||||||||||||||||||| | |||| || ||||| |||| ||||| |||||||||||||| || ||||||||||||||| ||||| |||||||||||| |
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|
| T |
290348 |
aaagttctatgatcccaaatctaccaatgtagttccatggcaaacacgtaatgtttctatagaaggaccaatgacttggtacaagaccactttcaagacc |
290447 |
T |
|
| Q |
413 |
cctgatggtacaaaccccgtagtcttggacttgataggccttcagaaaggagaagcatgggttaatggtcaaagtattggaaggtattgg |
502 |
Q |
| |
|
||||| ||| |||||| |||||| |||| |||||||| ||||| | |||| ||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
290448 |
cctgaaggttcaaaccttgtagtcctggatttgataggtcttcaaagaggaaaagcatgggttaacggtcaaagtatcggaaggtattgg |
290537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 617 - 703
Target Start/End: Original strand, 290571 - 290657
Alignment:
| Q |
617 |
gtgccaaggtcattcttaaatatcgatgtaaacacgttggttttgtttgaggaaatgggttttggtgcaacccctttcaatgcgtct |
703 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||| |||||||| || ||||| | |||| | ||||||||||| |||| |
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| T |
290571 |
gtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagagctgggtctaggtgaaggccctttcaatgtgtct |
290657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 124 - 499
Target Start/End: Original strand, 24531886 - 24532258
Alignment:
| Q |
124 |
aggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttgggggtcctgta |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| | |||||| ||| |||| |||||||| |||||||||| ||||||||||||| ||| |
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|
| T |
24531886 |
aggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaagaaactggtattgttgggggtcatgtt |
24531985 |
T |
|
| Q |
224 |
aaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaaaaagttctatg |
323 |
Q |
| |
|
|||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||||| |
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|
| T |
24531986 |
aaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtatggctagaaagttctatg |
24532085 |
T |
|
| Q |
324 |
atcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacccctgatggtac |
423 |
Q |
| |
|
|||||||| | | |||||||| ||||| | || ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || | |
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|
| T |
24532086 |
atcccaaa---tctaatggagttccatggataccacgtaatgtttctataggagtaccaatgacttggtacaagaccactttcaagacccctgaagggtc |
24532182 |
T |
|
| Q |
424 |
aaaccccgtagtcttggacttgataggccttcagaaaggagaagcatgggttaatggtcaaagtattggaaggtat |
499 |
Q |
| |
|
||||| |||||| |||| |||||||||||||| | |||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
24532183 |
aaaccttgtagtcctggatttgataggccttcaaagaggaaaagcatgggttaatggtcaatgtattggaaggtat |
24532258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 124 - 499
Target Start/End: Original strand, 24525213 - 24525586
Alignment:
| Q |
124 |
aggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttggggg-tcctgt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| | |||||| ||| |||| |||||||| |||||||||| ||||||||||| || ||| |
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|
| T |
24525213 |
aggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaagaaactggtattgttggggggtcatgt |
24525312 |
T |
|
| Q |
223 |
aaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaaaaagttctat |
322 |
Q |
| |
|
|||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |
|
|
| T |
24525313 |
gaaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggatgaatggtatggctagaaagttctaa |
24525412 |
T |
|
| Q |
323 |
gatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacccctgatggta |
422 |
Q |
| |
|
||||||| | | | |||||||| ||||| | || ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| | || |
|
|
| T |
24525413 |
gatcccaga---tctaatggagttccatggataccacgtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccctaaagggt |
24525509 |
T |
|
| Q |
423 |
caaaccccgtagtcttggacttgataggccttcagaaaggagaagcatgggttaatggtcaaagtattggaaggtat |
499 |
Q |
| |
|
|||||| |||||| |||| |||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24525510 |
caaaccttgtagtcctggatttgataggccttcaaagaggaaaagcatgggttaatggtcaaagtattggaaggtat |
24525586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 617 - 703
Target Start/End: Original strand, 24525623 - 24525709
Alignment:
| Q |
617 |
gtgccaaggtcattcttaaatatcgatgtaaacacgttggttttgtttgaggaaatgggttttggtgcaacccctttcaatgcgtct |
703 |
Q |
| |
|
||||||||| ||||||| |||| ||||||||||| ||||| |||||||||||| ||||| | |||| | ||||||||||| |||| |
|
|
| T |
24525623 |
gtgccaaggccattctttaataaagatgtaaacacattggtcttgtttgaggaattgggtctgggtgaaggccctttcaatgtgtct |
24525709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 676
Target Start/End: Original strand, 24532295 - 24532354
Alignment:
| Q |
617 |
gtgccaaggtcattcttaaatatcgatgtaaacacgttggttttgtttgaggaaatgggt |
676 |
Q |
| |
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||||||||| ||||||| |||| ||||||||||| ||||| |||||||||||| ||||| |
|
|
| T |
24532295 |
gtgccaaggccattctttaataaagatgtaaacacattggtcttgtttgaggaattgggt |
24532354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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