View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13429_low_11 (Length: 461)
Name: NF13429_low_11
Description: NF13429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13429_low_11 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 30 - 456
Target Start/End: Complemental strand, 13945524 - 13945106
Alignment:
| Q |
30 |
aatgtaaaaataacattgaaagatacgaaaatatgaaatgtttggatttcnnnnnnnnnncatagttcatcggtggttttgtttaaattttttattattg |
129 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||| |||||||| |||| | |
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| T |
13945524 |
aatgtaacaataacattgaaagatacgaaaatatgaaatgtttggctttctttttttt--catagttcatacgtgattttgtttc---------ttatcg |
13945436 |
T |
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| Q |
130 |
acactttgttcaaaatatagcaagaagtgttgatgctt---gcccaaaaatatttttcaatatttagaatgatggatgcttctccaagtgcagcttggtt |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
13945435 |
acactttgttcaaaatatagcaagaagtgttgatgctttctgcccaaaaatatttttcaatatttagaatgatggatggttctccaagtgtagcttggtt |
13945336 |
T |
|
| Q |
227 |
gtgatcctaatctgctatgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaac |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13945335 |
gtgatcctaatctgctatgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaac |
13945236 |
T |
|
| Q |
327 |
ttattttgctagcattgcttcgttgaacatccttaagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaacga |
426 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13945235 |
ttattttgctagcattgcttcgttgaacatccttaagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaatga |
13945136 |
T |
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| Q |
427 |
atcttcgtgtggtcccctatgcttctccac |
456 |
Q |
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|||||| |||| |||||| |||||| |||| |
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| T |
13945135 |
atcttcctgtgatcccctttgcttccccac |
13945106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 30 - 456
Target Start/End: Complemental strand, 14086713 - 14086295
Alignment:
| Q |
30 |
aatgtaaaaataacattgaaagatacgaaaatatgaaatgtttggatttcnnnnnnnnnncatagttcatcggtggttttgtttaaattttttattattg |
129 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||| |||||||| |||| | |
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| T |
14086713 |
aatgtaacaataacattgaaagatacgaaaatatgaaatgtttggctttctttttttt--catagttcatacgtgattttgtttc---------ttatcg |
14086625 |
T |
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| Q |
130 |
acactttgttcaaaatatagcaagaagtgttgatgctt---gcccaaaaatatttttcaatatttagaatgatggatgcttctccaagtgcagcttggtt |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
14086624 |
acactttgttcaaaatatagcaagaagtgttgatgctttctgcccaaaaatatttttcaatatttagaatgatggatggttctccaagtgtagcttggtt |
14086525 |
T |
|
| Q |
227 |
gtgatcctaatctgctatgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaac |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086524 |
gtgatcctaatctgctatgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaac |
14086425 |
T |
|
| Q |
327 |
ttattttgctagcattgcttcgttgaacatccttaagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaacga |
426 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14086424 |
ttattttgctagcattgcttcgttgaacatccttaagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaatga |
14086325 |
T |
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| Q |
427 |
atcttcgtgtggtcccctatgcttctccac |
456 |
Q |
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|||||| |||| |||||| |||||| |||| |
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| T |
14086324 |
atcttcctgtgatcccctttgcttccccac |
14086295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 13945480 - 13945512
Alignment:
| Q |
2 |
ccaaacattgcatattttcgtatctttcaatgt |
34 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
13945480 |
ccaaacatttcatattttcgtatctttcaatgt |
13945512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 14086669 - 14086701
Alignment:
| Q |
2 |
ccaaacattgcatattttcgtatctttcaatgt |
34 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
14086669 |
ccaaacatttcatattttcgtatctttcaatgt |
14086701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 166922 - 166832
Alignment:
| Q |
104 |
ggttttgtttaaattttttattattgacactttgttcaaaatatagcaagaagtgttgatgct---tgcccaaaaatatttttcaatattt |
191 |
Q |
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||||||||||||| |||| ||||||| ||| |||| || |||||||||||||| || ||| | |||||||||||| ||||||| |||| |
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| T |
166922 |
ggttttgtttaaaacttttcttattgaaactctgtttaagatatagcaagaagtatttatggtttctgcccaaaaatacttttcaacattt |
166832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 23915162 - 23915194
Alignment:
| Q |
132 |
actttgttcaaaatatagcaagaagtgttgatg |
164 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
23915162 |
actttgtccaaaatatagcaagaagtgttgatg |
23915194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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