View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13429_low_12 (Length: 419)

Name: NF13429_low_12
Description: NF13429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13429_low_12
NF13429_low_12
[»] chr8 (4 HSPs)
chr8 (1-407)||(29681243-29681654)
chr8 (1-34)||(17659109-17659142)
chr8 (1-34)||(23680440-23680473)
chr8 (3-31)||(45255661-45255689)
[»] chr1 (3 HSPs)
chr1 (198-407)||(26463133-26463342)
chr1 (1-34)||(17708257-17708290)
chr1 (1-34)||(30110754-30110787)
[»] chr2 (3 HSPs)
chr2 (287-407)||(11486869-11486989)
chr2 (1-34)||(1380360-1380393)
chr2 (1-34)||(2999577-2999610)
[»] chr7 (2 HSPs)
chr7 (1-34)||(4077553-4077586)
chr7 (1-34)||(7458500-7458533)
[»] chr6 (6 HSPs)
chr6 (1-34)||(649895-649928)
chr6 (1-34)||(9199081-9199114)
chr6 (1-31)||(11060694-11060724)
chr6 (1-34)||(17079020-17079053)
chr6 (1-34)||(17873647-17873680)
chr6 (1-34)||(18051278-18051311)
[»] chr5 (4 HSPs)
chr5 (1-34)||(4415529-4415562)
chr5 (1-34)||(7000594-7000627)
chr5 (1-34)||(20208548-20208581)
chr5 (3-31)||(6049503-6049531)
[»] chr4 (5 HSPs)
chr4 (1-34)||(18106385-18106418)
chr4 (1-34)||(34322148-34322181)
chr4 (1-34)||(42778516-42778549)
chr4 (1-34)||(53486782-53486815)
chr4 (1-34)||(53780323-53780356)
[»] chr3 (2 HSPs)
chr3 (1-34)||(47537546-47537579)
chr3 (1-34)||(48192077-48192110)
[»] scaffold0912 (1 HSPs)
scaffold0912 (1-34)||(2702-2735)
[»] scaffold0179 (1 HSPs)
scaffold0179 (1-34)||(7806-7839)


Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 29681654 - 29681243
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccaccttcaccacacccatgttgagttaatataatattatggatctagttcatgaatcaatggtaatatac 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  29681654 acaacctcctcctctacttccacgcctccccaccttcaccacacccatgttgcgttaatataatattatggatctagttcatgaatctatggtaatatac 29681555  T
Q  101 tgaattgaaaaatttatattcttatcaaataactgaatctcaaactcattataatttctgcaagtccaaa-----attgattcagcatgtattcagaatc 195  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||     ||||||||| |||||||||| ||||    
T  29681554 tgaattgaaaaatttattttcttatcaaacaactgaatctcaaactcattataatttctgcaagtccaaattaaaattgattcaacatgtattcacaatc 29681455  T
Q  196 acaatgtcagcacaaaaagagaagatgcacatagaaaggagaaagcctaataccacagctaaaaatttacagccctgtgtttttacaattccacaagtca 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29681454 acaatgtcagcacaaaaagagaagatgcacatagaaaggagaaagcctaataccacagctaaaaaattacagccctgtgtttttacaattccacaagtca 29681355  T
Q  296 agtatatcactggtctagtgtttccttcaactgcaaggaattcaaaactcccttgcaggctagtcttgtagctgttttcttgtcggtagaacctttgtac 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29681354 agtatatcactggtctagtgtttccttcaactgcaaggaattcaaaactcccttgcaggctagtcttgtagctgttttcttgtcggtagaacctttgtac 29681255  T
Q  396 tcgtattgatga 407  Q
    ||||||||||||    
T  29681254 tcgtattgatga 29681243  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17659109 - 17659142
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  17659109 acaacctcctcctccacttccacgcctccccacc 17659142  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 23680440 - 23680473
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    |||||| |||||||||||||||||||||||||||    
T  23680440 acaaccccctcctccacttccacgcctccccacc 23680473  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 45255689 - 45255661
Alignment:
Q  3 aacctcctcctccacttccacgcctcccc 31  Q
    |||||||||||||||||||||||||||||    
T  45255689 aacctcctcctccacttccacgcctcccc 45255661  T

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Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 198 - 407
Target Start/End: Complemental strand, 26463342 - 26463133
Alignment:
Q  198 aatgtcagcacaaaaagagaagatgcacatagaaaggagaaagcctaataccacagctaaaaatttacagccctgtgtttttacaattccacaagtcaag 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||  ||||||| ||||||||||||||||||||||||||     
T  26463342 aatgtcagcacaaaaagagaagatgcacatagaaaggagaaagcctaataccaaggctaaaaaactacagccttgtgtttttacaattccacaagtcaat 26463243  T
Q  298 tatatcactggtctagtgtttccttcaactgcaaggaattcaaaactcccttgcaggctagtcttgtagctgttttcttgtcggtagaacctttgtactc 397  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26463242 tatatcactggtcttgtgtttccttcaactgcaaggaattcaaaactctcttgcaggctagtcttgtagctgttttcttgtcagtagaacctttgtactc 26463143  T
Q  398 gtattgatga 407  Q
    ||||||||||    
T  26463142 gtattgatga 26463133  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17708257 - 17708290
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  17708257 acaacctcctcctccacttccacgcctccccacc 17708290  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30110787 - 30110754
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  30110787 acaacctcctcctccacttccacgcctccccacc 30110754  T

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Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 287 - 407
Target Start/End: Original strand, 11486869 - 11486989
Alignment:
Q  287 cacaagtcaagtatatcactggtctagtgtttccttcaactgcaaggaattcaaaactcccttgcaggctagtcttgtagctgttttcttgtcggtagaa 386  Q
    ||||||| | ||||||||||  ||| |||||| |||| | |||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  11486869 cacaagttatgtatatcacttttcttgtgtttacttccattgcaaggaatgcaaaactcccttgcaggctagtcttgtggcagttttcttgtcggtagaa 11486968  T
Q  387 cctttgtactcgtattgatga 407  Q
    |||||||||||| | ||||||    
T  11486969 cctttgtactcgaactgatga 11486989  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1380360 - 1380393
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  1380360 acaacctcctcctccacttccacgcctccccacc 1380393  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2999610 - 2999577
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  2999610 acaacctcctcctccacttccacgcctccccacc 2999577  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4077553 - 4077586
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  4077553 acaacctcctcctccacttccacgcctccccacc 4077586  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 7458533 - 7458500
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    |||||||||||||||||||||| |||||||||||    
T  7458533 acaacctcctcctccacttccaagcctccccacc 7458500  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 649928 - 649895
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  649928 acaacctcctcctccacttccacgcctccccacc 649895  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9199114 - 9199081
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  9199114 acaacctcctcctccacttccacgcctccccacc 9199081  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 11060724 - 11060694
Alignment:
Q  1 acaacctcctcctccacttccacgcctcccc 31  Q
    |||||||||||||||||||||||||||||||    
T  11060724 acaacctcctcctccacttccacgcctcccc 11060694  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17079053 - 17079020
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    |||||||||||||||||| |||||||||||||||    
T  17079053 acaacctcctcctccactcccacgcctccccacc 17079020  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17873680 - 17873647
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    |||||||||||||||||||||| |||||||||||    
T  17873680 acaacctcctcctccacttccaagcctccccacc 17873647  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 18051311 - 18051278
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    |||||||||||||||||| |||||||||||||||    
T  18051311 acaacctcctcctccactcccacgcctccccacc 18051278  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 4415562 - 4415529
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  4415562 acaacctcctcctccacttccacgcctccccacc 4415529  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 7000627 - 7000594
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  7000627 acaacctcctcttccacttccacgcctccccacc 7000594  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 20208581 - 20208548
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  20208581 acaacctcctcctccacctccacgcctccccacc 20208548  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 6049503 - 6049531
Alignment:
Q  3 aacctcctcctccacttccacgcctcccc 31  Q
    |||||||||||||||||||||||||||||    
T  6049503 aacctcctcctccacttccacgcctcccc 6049531  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 18106418 - 18106385
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  18106418 acaacctcctcctccacttccacgcctccccacc 18106385  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 34322181 - 34322148
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  34322181 acaacctcctcctccacttccacgcctccccacc 34322148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42778516 - 42778549
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  42778516 acaacctcctcctccacttccacgcctccccacc 42778549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 53486815 - 53486782
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  53486815 acaacctcctcctccacttccacgcctccccacc 53486782  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 53780323 - 53780356
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    |||||||||||||||||||||| |||||||||||    
T  53780323 acaacctcctcctccacttccaagcctccccacc 53780356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 47537546 - 47537579
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  47537546 acaacctcctcctccacttccacgcctccccacc 47537579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 48192077 - 48192110
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  48192077 acaacctcctcctccacttccacgcctccccacc 48192110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2735 - 2702
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    |||||||||||||||||| |||||||||||||||    
T  2735 acaacctcctcctccactcccacgcctccccacc 2702  T

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Target: scaffold0179 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7806 - 7839
Alignment:
Q  1 acaacctcctcctccacttccacgcctccccacc 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  7806 acaacctcctcctccacctccacgcctccccacc 7839  T

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