View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13429_low_14 (Length: 400)
Name: NF13429_low_14
Description: NF13429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13429_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 14782709 - 14782329
Alignment:
| Q |
1 |
gaaacaaaaaatcactttttcaaatctcaattgtgttattcttctcacattgagttcaatcattcttgcattgaattctagtgctgagagaccaaaagga |
100 |
Q |
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| T |
14782709 |
gaaacaaaaaatcactttttcaaatctcaattgtgttattcttctcacattgagttcaatcattcttgcattgaattctagtagtgagagaccaaaagga |
14782610 |
T |
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| Q |
101 |
ctaacgaaaaaagaatactttattggattcttttgcacccttggtgcagggttgttatttgcactttatttaccagttatggagaaggtttataaaaagg |
200 |
Q |
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| T |
14782609 |
ctaacaaaaaaagaatactttattggattcttttgcacccttggtgcagggttgttatttgcactttatttaccagttatggagaaagtttataaaaagg |
14782510 |
T |
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| Q |
201 |
tttattgttacgaaatggtgatggaaatgcagcttataatggagattgcagcgacggttttagcgacggtaggaatggcgtgggacggcggatttaaaga |
300 |
Q |
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| T |
14782509 |
tttattgttacgaaatggtgatggaaatgcagcttataatggagattgcagcgacggttttagcgacggtaggaatggcatgggacggtggatttaaaga |
14782410 |
T |
|
| Q |
301 |
aatgaagagagaaagtgaggaggtttttgacaagggaagtagggtttattgggtgacggttatggcgaatgtcgtgacgtg |
381 |
Q |
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| T |
14782409 |
aatgaagagagaaagtgaggaggtttttgacaagggaagtagggtttattgggtgacggttatggctaatgtcgtgacgtg |
14782329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 5 - 381
Target Start/End: Complemental strand, 14774828 - 14774452
Alignment:
| Q |
5 |
caaaaaatcactttttcaaatctcaattgtgttattcttctcacattgagttcaatcattcttgcattgaattctagtgctgagagaccaaaaggactaa |
104 |
Q |
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| T |
14774828 |
caaaaaatcaccttttcaaatctcaactgtgtgatccttcttacactaagttctatccttcttgcattggattctagtaatgaaaaaccaaatgggctaa |
14774729 |
T |
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| Q |
105 |
cgaaaaaagaatactttattggattcttttgcacccttggtgcagggttgttatttgcactttatttaccagttatggagaaggtttataaaaaggttta |
204 |
Q |
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| T |
14774728 |
ctaaaaaagagtactttattggattcttttgcacaattggtgcagggttgttatttgcattgtatttaccagtgatggagaaggtttataaagatgttta |
14774629 |
T |
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| Q |
205 |
ttgttacgaaatggtgatggaaatgcagcttataatggagattgcagcgacggttttagcgacggtaggaatggcgtgggacggcggatttaaagaaatg |
304 |
Q |
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| T |
14774628 |
ttgttatgaaatggtgatggaaatgcagcttataatggagattgcagccactgttttagctactataggtatgggaatggatggtggattttctgaaatg |
14774529 |
T |
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| Q |
305 |
aagagagaaagtgaggaggtttttgacaagggaagtagggtttattgggtgacggttatggcgaatgtcgtgacgtg |
381 |
Q |
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| T |
14774528 |
aagagagaaagtgaagaaatttttgataagggaagtttggtttattgggtgacagttatggctaatgtggtgacgtg |
14774452 |
T |
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