View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13429_low_16 (Length: 370)
Name: NF13429_low_16
Description: NF13429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13429_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 42086367 - 42086018
Alignment:
| Q |
1 |
tccatcagcttgtgagatattgtttggcaattgatttctttgaatcaaacgtgcttctggaaaatcacttaaaggaaattcatcagagtctgtgaatctg |
100 |
Q |
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| T |
42086367 |
tccatcagcttgtgagatattgtttggcaattgatttctttgaatcaaacgtgcttctggaaaatcacttaaaggaaattcatcagagtctgtgaatctg |
42086268 |
T |
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| Q |
101 |
tgcggaagattcatccaaagagaataataacaagctaaaccataaccactagcaccactaaaaacaacatgaaaaacaccaagttctttagcaacggttg |
200 |
Q |
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| T |
42086267 |
tgcggaagattcatccaaagagaataataacaagctaaaccataaccactagcaccactaaaaacaacatgaaaaacaccaagttctttagcaacggttg |
42086168 |
T |
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| Q |
201 |
aagtccagccaaagaaaatatcagaaataatacatagtttatggttaggttgttgggttaagatgttttggatgatgtttttgaaggaaggttttaagga |
300 |
Q |
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| T |
42086167 |
aagtccaaccaaagaaaatatcagaaataatacatagtttatggttaggttgttgggttaagatgttttggatgatgtatttgaaggaaggttttaagga |
42086068 |
T |
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| Q |
301 |
aagagaagcttggatgagtttgatgacaagattgtaagggacagtatcag |
350 |
Q |
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| T |
42086067 |
aagagaagcttggatgagtttgatgacaagattgtaagggacagtatcag |
42086018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 250 - 345
Target Start/End: Complemental strand, 42081895 - 42081800
Alignment:
| Q |
250 |
ttgttgggttaagatgttttggatgatgtttttgaaggaaggttttaaggaaagagaagcttggatgagtttgatgacaagattgtaagggacagt |
345 |
Q |
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| T |
42081895 |
ttgtttggttatgatgttttggatgatgtttttgaaggatggttttaaggaaagagaagtttgtatacgtttgatgacaagattgcaaggaacagt |
42081800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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