View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13429_low_19 (Length: 344)
Name: NF13429_low_19
Description: NF13429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13429_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 328
Target Start/End: Original strand, 14901247 - 14901569
Alignment:
| Q |
7 |
catcaagtacaaatcaaaaggagattttggagaagaaaggttctatcttggaaccaattgttgaaaatgatgagaataagaaaccagtatcttgcagctt |
106 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14901247 |
catcaagtactaatcaaaaggagattttggagaagaaaggttctaccttggaaccaattgttgaaaatgatgagaacaagaaaccagtatcttgcagctt |
14901346 |
T |
|
| Q |
107 |
aagcaacacagtcaagttgggaaaacagattgaaacagaagctgggaattggtttatggaattcatcgagaaggctttggaagctggtttg-nnnnnnnn |
205 |
Q |
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| T |
14901347 |
aagcaacacagtcaagttgggaaaacagattgaaacagaagctgggaattggtttatggaattcatcgagaaggctttggaagctggtttgaaaaaaaca |
14901446 |
T |
|
| Q |
206 |
nnggaagcatcaaaaggggatgttcgtaaagtccctcaatcacttatacttaaagttatgaactgggttgaggtagaacaataccatagtaataaaaggc |
305 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14901447 |
aaggaagagtcaaaaggggatgttcgtaaagtccctcaatcacttatacttaaagttatgaactgggttgaggtagaacaataccatagtaataagaggc |
14901546 |
T |
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| Q |
306 |
ctagccatcctaaagcagcacag |
328 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
14901547 |
ctagccatcctaaagcagcacag |
14901569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 328
Target Start/End: Original strand, 14908011 - 14908332
Alignment:
| Q |
9 |
tcaagtacaaatcaaaaggagattttggagaagaaaggttctatcttggaaccaattgttgaaaatgatgagaataagaaaccagtatcttgcagcttaa |
108 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14908011 |
tcaagtacaaatcaaaaggagatttcggagaagaaaagttctatctcagaacctattgttgaaaatgatgagaataagaaaccagtatcttgcagcttaa |
14908110 |
T |
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| Q |
109 |
gcaaca-cagtcaagttgggaaaacagattgaaacagaagctgggaattggtttatggaattcatcgagaaggctttggaagctggtttg-nnnnnnnnn |
206 |
Q |
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|||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14908111 |
gcaacaccaattaagttgggaaaacagattgaaacagaagctgggaattggtttatggaattcatcgagaaggctttggaagctggtttgaaaaaaacaa |
14908210 |
T |
|
| Q |
207 |
nggaagcatcaaaaggggatgttcgtaaagtccctcaatcacttatacttaaagttatgaactgggttgaggtagaacaataccatagtaataaaaggcc |
306 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14908211 |
aggaagcgtcaaaaggggatgttcgtaaagtccctcaatcacttatacttaaagttatgaactgggttgaggtagaacaataccatagtaataaaaggcc |
14908310 |
T |
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| Q |
307 |
tagccatcctaaagcagcacag |
328 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
14908311 |
tagccatcctaaagcagcacag |
14908332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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