View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13429_low_27 (Length: 239)
Name: NF13429_low_27
Description: NF13429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13429_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 49 - 186
Target Start/End: Complemental strand, 7657630 - 7657484
Alignment:
| Q |
49 |
agccatgaacttgaacaggcacaggtcctcctcctccacctttctttccatt------------tccaacacccttttgagcattcatcatcatgtgagc |
136 |
Q |
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| T |
7657630 |
agccatgaacttgaacaggcacaggtcctgctcc---acctttctttccattgcctccaccacttccaacacccttttgagcattcatcatcatgtgagc |
7657534 |
T |
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| Q |
137 |
aggaccattaccccccataggtagtttcatcttattcaaaggatgttcca |
186 |
Q |
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| T |
7657533 |
aggaccattaccccccataggtagtttcatcttattcaaaggatgttcca |
7657484 |
T |
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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 7652153 - 7652086
Alignment:
| Q |
110 |
cttttgagcattcatcatcatgtgagcaggaccattaccccccataggtagtttcatcttattcaaag |
177 |
Q |
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| T |
7652153 |
cttttgagcattcatcatcatgtgagcaggaccattactccccatagatagtttcattttattcaaag |
7652086 |
T |
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