View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13429_low_5 (Length: 508)
Name: NF13429_low_5
Description: NF13429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13429_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 20 - 473
Target Start/End: Complemental strand, 54787050 - 54786598
Alignment:
| Q |
20 |
catctttcttgttgaacaagctttttcgggcactattagagaggcattgtcaggtgggagtggttcaacgttaatatcaaccttcattccatggaagcaa |
119 |
Q |
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| T |
54787050 |
catctttcttgttgaacaagctttttcgggcactattggagaggcattgtcaggtgggagtggttcaacgttaatatcaaccttcattccatggaagcaa |
54786951 |
T |
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| Q |
120 |
aagcctctaccacatagaaagtaatatgtctttgcctctaatagttggaaaacatctcttcctcctctcgtgatgttgcttatgaagcccttatcaacac |
219 |
Q |
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| T |
54786950 |
aagcctctaccacatagaaagtaatatgtctttgcctctaagagttggaaaacatctcttcctcctctcgtgatgttgcttatgaagcccttatcaacac |
54786851 |
T |
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| Q |
220 |
atttctcataatttgttttgttcacctcaagaacattatagatgtgcttatcaaaaccaaaatctatttacaaaaaagagaattcacttcagttaataat |
319 |
Q |
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| T |
54786850 |
atttctcataatttgttttgttcacctcaagaacattatagatgtgcttatcaaaaccaaaatctatttacaaaaaagagaattcacttcagttaataat |
54786751 |
T |
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| Q |
320 |
aaataaattatttgcaatgatattaatcaacatgtgtcaggaaggaacgaacttacatagccaatcaccctgataaaagtgctcattacttgcccaattt |
419 |
Q |
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| T |
54786750 |
aaataaa-tatttgcaatgatattaatcaacatgtgtcaggaaggaacgaacttacatagccaatcaccctggtaaaagtgctcattacttgcccaattt |
54786652 |
T |
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| Q |
420 |
gtgaagttaatttttggatcccaagtataccttccacctccaaccctgtgcaac |
473 |
Q |
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| T |
54786651 |
gtgaagttaatttttggatcccaagtataccttccacctccaaccctgtgcaac |
54786598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 498
Target Start/End: Original strand, 20951431 - 20951465
Alignment:
| Q |
464 |
cctgtgcaaccagtgttggagttagttgatgatgt |
498 |
Q |
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| T |
20951431 |
cctgtgcaaccagtgttggagttagttgatgatgt |
20951465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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