View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13429_low_6 (Length: 500)

Name: NF13429_low_6
Description: NF13429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13429_low_6
NF13429_low_6
[»] chr6 (19 HSPs)
chr6 (19-432)||(14589294-14589707)
chr6 (19-430)||(14622952-14623363)
chr6 (274-400)||(33123017-33123143)
chr6 (23-250)||(12846853-12847080)
chr6 (262-402)||(7632776-7632916)
chr6 (279-414)||(7632781-7632916)
chr6 (278-401)||(26388201-26388324)
chr6 (297-416)||(29938608-29938726)
chr6 (262-387)||(3989531-3989656)
chr6 (282-400)||(3989524-3989642)
chr6 (279-397)||(14589554-14589672)
chr6 (263-397)||(26388202-26388336)
chr6 (279-397)||(33123022-33123140)
chr6 (354-413)||(10405046-10405105)
chr6 (279-397)||(14623212-14623330)
chr6 (279-389)||(29938627-29938736)
chr6 (357-401)||(30629598-30629642)
chr6 (274-319)||(30629597-30629642)
chr6 (262-318)||(32124214-32124270)
[»] chr4 (41 HSPs)
chr4 (19-261)||(51369340-51369582)
chr4 (19-259)||(29954871-29955111)
chr4 (260-401)||(22720498-22720639)
chr4 (263-416)||(22720498-22720651)
chr4 (262-401)||(52673592-52673731)
chr4 (260-401)||(22768136-22768277)
chr4 (261-414)||(52673592-52673745)
chr4 (263-401)||(22768151-22768289)
chr4 (281-399)||(41622106-41622224)
chr4 (263-401)||(44626157-44626293)
chr4 (299-413)||(41622128-41622242)
chr4 (262-327)||(2198042-2198107)
chr4 (263-330)||(22923654-22923721)
chr4 (263-330)||(22928307-22928374)
chr4 (263-330)||(22984586-22984653)
chr4 (263-330)||(22998174-22998241)
chr4 (354-414)||(2198042-2198102)
chr4 (260-333)||(5970275-5970348)
chr4 (354-414)||(15794757-15794818)
chr4 (354-402)||(39396827-39396875)
chr4 (279-331)||(39396832-39396884)
chr4 (354-413)||(2198122-2198180)
chr4 (354-401)||(22923666-22923713)
chr4 (354-401)||(22928319-22928366)
chr4 (354-401)||(22984598-22984645)
chr4 (354-401)||(22998186-22998233)
chr4 (273-332)||(49083047-49083105)
chr4 (304-346)||(15794800-15794842)
chr4 (364-406)||(50485791-50485833)
chr4 (263-332)||(52299073-52299141)
chr4 (354-402)||(6131436-6131484)
chr4 (358-414)||(22020110-22020166)
chr4 (260-312)||(22923712-22923764)
chr4 (260-312)||(22928365-22928417)
chr4 (260-312)||(22984644-22984696)
chr4 (260-312)||(22998232-22998284)
chr4 (272-332)||(34016165-34016224)
chr4 (357-401)||(35884359-35884403)
chr4 (263-319)||(35884418-35884474)
chr4 (357-401)||(35884418-35884462)
chr4 (358-414)||(39897103-39897159)
[»] chr3 (14 HSPs)
chr3 (19-241)||(11532184-11532406)
chr3 (259-379)||(35239682-35239802)
chr3 (270-377)||(50334923-50335030)
chr3 (297-399)||(29497369-29497471)
chr3 (263-371)||(32186884-32186992)
chr3 (297-401)||(35239682-35239786)
chr3 (354-397)||(50334932-50334975)
chr3 (279-379)||(29497371-29497471)
chr3 (305-401)||(32186896-32186992)
chr3 (262-326)||(36344518-36344582)
chr3 (354-414)||(36344522-36344582)
chr3 (262-327)||(1779488-1779553)
chr3 (297-333)||(379152-379188)
chr3 (358-402)||(39836955-39836999)
[»] chr2 (18 HSPs)
chr2 (19-258)||(20493006-20493245)
chr2 (23-195)||(1355339-1355511)
chr2 (31-195)||(1362233-1362397)
chr2 (261-369)||(8996792-8996900)
chr2 (263-320)||(43100744-43100801)
chr2 (299-402)||(8717540-8717643)
chr2 (307-401)||(8996792-8996886)
chr2 (272-330)||(10495722-10495780)
chr2 (279-334)||(8996734-8996789)
chr2 (354-401)||(10495730-10495777)
chr2 (309-384)||(39792136-39792211)
chr2 (354-401)||(43100756-43100803)
chr2 (263-312)||(13953862-13953911)
chr2 (364-401)||(13953862-13953899)
chr2 (263-312)||(14095069-14095118)
chr2 (364-401)||(14095069-14095106)
chr2 (354-402)||(8996729-8996777)
chr2 (262-334)||(20218620-20218692)
[»] chr5 (17 HSPs)
chr5 (266-400)||(26221022-26221156)
chr5 (278-401)||(21032539-21032662)
chr5 (272-401)||(42364224-42364353)
chr5 (260-401)||(42364227-42364368)
chr5 (279-402)||(29486504-29486627)
chr5 (270-402)||(29486500-29486632)
chr5 (263-402)||(5240221-5240359)
chr5 (274-397)||(21032538-21032661)
chr5 (299-401)||(5240233-5240335)
chr5 (272-414)||(7604182-7604325)
chr5 (289-397)||(26221035-26221143)
chr5 (358-413)||(36864512-36864567)
chr5 (263-394)||(12959939-12960072)
chr5 (280-399)||(892560-892679)
chr5 (372-413)||(25713694-25713735)
chr5 (269-334)||(27895898-27895963)
chr5 (279-327)||(892562-892610)
[»] chr8 (14 HSPs)
chr8 (263-401)||(6197821-6197959)
chr8 (262-397)||(6197837-6197972)
chr8 (262-387)||(13325116-13325237)
chr8 (309-401)||(27939032-27939124)
chr8 (272-397)||(43140550-43140676)
chr8 (272-401)||(43140553-43140683)
chr8 (263-381)||(11322589-11322706)
chr8 (261-328)||(28205791-28205858)
chr8 (295-413)||(11322589-11322706)
chr8 (354-399)||(1214022-1214067)
chr8 (289-332)||(13325116-13325159)
chr8 (311-398)||(28205808-28205895)
chr8 (288-334)||(158447-158493)
chr8 (354-387)||(158448-158481)
[»] chr7 (23 HSPs)
chr7 (262-416)||(4132380-4132535)
chr7 (260-397)||(4132397-4132535)
chr7 (262-327)||(26982758-26982823)
chr7 (354-401)||(26982771-26982818)
chr7 (266-416)||(38646164-38646315)
chr7 (274-416)||(41115556-41115698)
chr7 (263-332)||(21857064-21857133)
chr7 (354-414)||(45578005-45578065)
chr7 (260-327)||(34840606-34840673)
chr7 (354-401)||(43250425-43250472)
chr7 (354-423)||(24155643-24155712)
chr7 (354-399)||(38646175-38646220)
chr7 (274-327)||(43250420-43250473)
chr7 (262-330)||(24155635-24155703)
chr7 (260-320)||(38646255-38646315)
chr7 (271-334)||(11602841-11602904)
chr7 (272-330)||(21587839-21587897)
chr7 (359-401)||(43250376-43250418)
chr7 (297-333)||(7107709-7107745)
chr7 (272-332)||(21857162-21857222)
chr7 (297-333)||(29770401-29770437)
chr7 (357-397)||(40037646-40037686)
chr7 (273-317)||(43250374-43250418)
[»] chr1 (16 HSPs)
chr1 (262-411)||(8352129-8352278)
chr1 (274-414)||(8352129-8352269)
chr1 (263-393)||(26468289-26468419)
chr1 (279-366)||(14773765-14773852)
chr1 (354-401)||(26468301-26468348)
chr1 (282-401)||(31635752-31635871)
chr1 (269-372)||(43731155-43731258)
chr1 (289-387)||(31635766-31635864)
chr1 (324-401)||(30800186-30800263)
chr1 (262-328)||(5368854-5368920)
chr1 (354-402)||(1659231-1659280)
chr1 (364-401)||(3384319-3384356)
chr1 (275-328)||(30800289-30800342)
chr1 (358-411)||(32796836-32796889)
chr1 (356-402)||(39969771-39969819)
chr1 (258-334)||(38834601-38834677)
[»] scaffold0155 (1 HSPs)
scaffold0155 (263-312)||(33971-34020)
[»] scaffold0007 (1 HSPs)
scaffold0007 (297-333)||(77378-77414)


Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 14589294 - 14589707
Alignment:
Q  19 agaagaaaagaaagtggctgttgaggtaccaaggagtgagccagatggggccattaatagggattgtgttgctaaaacattgaggttggtaatagtggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14589294 agaagaaaagaaagtggctgttgaggtaccaaggagtgagccagatggggccattaatagggactgtgttgctaaaacattgaggttggtaatagtggat 14589393  T
Q  119 gaggaaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaatacattaaaaacttcattgccactc 218  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14589394 gaggaaggaagtatttacaggaacaatgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaatacattaaaaacttcattgccactc 14589493  T
Q  219 ttcaaaagtttagagttcattccgacaattaagcatatttcatatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14589494 ttcaaaagtttagagttcattccgacaattaagcatatttcatatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataa 14589593  T
Q  319 ttcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtatatgt 418  Q
    ||||||||||||||||||| ||||||| |||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  14589594 ttcatgtatctagtctttattatagaccggacagattgattattcaatgtatctaaaaagtaaagttttatttataatagtgatgagagggagtataggt 14589693  T
Q  419 ttccttttcaactg 432  Q
    |||| |||||||||    
T  14589694 ttccctttcaactg 14589707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Original strand, 14622952 - 14623363
Alignment:
Q  19 agaagaaaagaaagtggctgttgaggtaccaaggagtgagccagatggggccattaatagggattgtgttgctaaaacattgaggttggtaatagtggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14622952 agaagaaaagaaagtggctgttgaggtaccaaggagtgagccagatggggccattaatagggactgtgttgctaaaacattgaggttggtaatagtggat 14623051  T
Q  119 gaggaaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaatacattaaaaacttcattgccactc 218  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14623052 gaggaaggaagtatttacaggaacaatgccaaagacatgggaaaggttgtgagttcaaaagatcttcacaatgaatacattaaaaatttcattgccactc 14623151  T
Q  219 ttcaaaagtttagagttcattccgacaattaagcatatttcatatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataa 318  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14623152 ttcaaaagtttagagttcattccgacaattaaacatatttcatatacttcattcggtcattattataagcaaaacttcacttttcagatacattgaataa 14623251  T
Q  319 ttcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtatatgt 418  Q
    |||||||||||| |||||| ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14623252 ttcatgtatctaatctttattatagactgaacagattaatttttcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtatatgt 14623351  T
Q  419 ttccttttcaac 430  Q
    |||| |||||||    
T  14623352 ttccctttcaac 14623363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 274 - 400
Target Start/End: Original strand, 33123017 - 33123143
Alignment:
Q  274 gtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatcta 373  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||  |||||||| || |  ||||||||| | ||||||||    
T  33123017 gtcattattataaacaaaacttcactttttaaatacattgaataattaatgtatctagtcttttttatagacttgatacgttaattattaagtgtatcta 33123116  T
Q  374 aaaagtgaagttttatttataatagtg 400  Q
    |||||| || ||||  |||||||||||    
T  33123117 aaaagtaaacttttgcttataatagtg 33123143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 12846853 - 12847080
Alignment:
Q  23 gaaaagaaagtggctgttgaggtaccaaggagtgagccagatggggccattaatagggattgtgttgctaaaacattgaggttggtaatagtggatgagg 122  Q
    ||||||||||||||  ||||||| ||||| ||||||   |||||| || ||| |||||| | ||| ||   |||||||||||| | |||| ||||||  |    
T  12846853 gaaaagaaagtggccattgaggttccaagaagtgaggaggatgggtcctttactagggactttgtagccctaacattgaggttagcaataatggatgccg 12846952  T
Q  123 aaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaatacattaaaaacttcattgccactcttca 222  Q
    |||||| ||||||||||||||| || ||||| ||||| ||| || | ||||||||||| ||||||||  |||||||| || | ||||||||  |||||||    
T  12846953 aaggaattatttacaggaacaatgcaaaagagatgggcaagattttcagttcaaaagaacttcacaaaaaatacattgaagatttcattgctgctcttca 12847052  T
Q  223 aaagtttagagttcattccgacaattaa 250  Q
    ||||| ||| |||||||| || ||||||    
T  12847053 aaagtatagggttcattctgagaattaa 12847080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 262 - 402
Target Start/End: Complemental strand, 7632916 - 7632776
Alignment:
Q  262 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattat 361  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||  |||| || || ||||| || |  || |||||    
T  7632916 atactccctccggtcattattataaacaaaacttaactttttagatacactgaataattaatgtatccggtctataataaagactagatacattgattat 7632817  T
Q  362 tcaatgtatctaaaaagtgaagttttatttataatagtgat 402  Q
    | ||||||  || ||||||||||||| ||||||||||||||    
T  7632816 tgaatgtagttagaaagtgaagttttgtttataatagtgat 7632776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 279 - 414
Target Start/End: Original strand, 7632781 - 7632916
Alignment:
Q  279 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaag 378  Q
    |||||||||||||||||||||||  |  |||||| ||||||  |||||||||||||||| ||||||| ||| |  ||||||||||| |||||||||||||    
T  7632781 tattataaacaaaacttcactttctaactacattcaataatcaatgtatctagtctttattatagaccggatacattaattattcagtgtatctaaaaag 7632880  T
Q  379 tgaagttttatttataatagtgatgagagggagtat 414  Q
    | ||||||| ||||||||| |||   ||||||||||    
T  7632881 ttaagttttgtttataataatgaccggagggagtat 7632916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 401
Target Start/End: Original strand, 26388201 - 26388324
Alignment:
Q  278 ttattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaa 377  Q
    |||||||||||||||||  |||||| ||||| ||||||||||| ||||||||| |||||| ||||||||| | |  ||||||||||||| ||| ||||||    
T  26388201 ttattataaacaaaactctactttttagatatattgaataattaatgtatctaatctttattatagactgaatacattaattattcaatatatataaaaa 26388300  T
Q  378 gtgaagttttatttataatagtga 401  Q
    ||| ||||||  ||||||||||||    
T  26388301 gtggagtttttcttataatagtga 26388324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 297 - 416
Target Start/End: Complemental strand, 29938726 - 29938608
Alignment:
Q  297 acttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataat 396  Q
    |||||| ||||||||||||||||| |||||||||||||||| | || ||| || |  ||||||||| ||||||||||||||||||| ||||| |||||||    
T  29938726 actttttagatacattgaataattaatgtatctagtctttattgtatactagatacattaattatt-aatgtatctaaaaagtgaaattttacttataat 29938628  T
Q  397 agtgatgagagggagtatat 416  Q
    |||||  ||| |||||||||    
T  29938627 agtgagcagatggagtatat 29938608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 262 - 387
Target Start/End: Complemental strand, 3989656 - 3989531
Alignment:
Q  262 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattat 361  Q
    |||||| || ||| || |||||||| |||||||| ||| || ||||||||||||||||| ||||||||||||| || || ||||| || |  || |||||    
T  3989656 atactcgctccggccactattataatcaaaacttaactattaagatacattgaataattgatgtatctagtctataataaagactagaaacattgattat 3989557  T
Q  362 tcaatgtatctaaaaagtgaagtttt 387  Q
    |  |||||| ||||||||||||||||    
T  3989556 tttatgtatttaaaaagtgaagtttt 3989531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 400
Target Start/End: Original strand, 3989524 - 3989642
Alignment:
Q  282 tataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtga 381  Q
    ||||| ||||||||||||||| | ||||||  ||||||  |||| ||||||||||| |||||||| || |  | ||||||||||||||||| || ||| |    
T  3989524 tataagcaaaacttcactttttaaatacataaaataatcaatgtttctagtctttattatagactagatacatcaattattcaatgtatcttaatagtta 3989623  T
Q  382 agttttatttataatagtg 400  Q
    ||||||  |||||||||||    
T  3989624 agttttgattataatagtg 3989642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 397
Target Start/End: Complemental strand, 14589672 - 14589554
Alignment:
Q  279 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaag 378  Q
    ||||||||| ||||||| |||||| ||||||||||||||||  || | ||  |||| || || ||||| || |  | ||||||||||||||||| |||||    
T  14589672 tattataaataaaactttactttttagatacattgaataatcaatctgtccggtctataataaagactagatacatgaattattcaatgtatctgaaaag 14589573  T
Q  379 tgaagttttatttataata 397  Q
    ||||||||| |||||||||    
T  14589572 tgaagttttgtttataata 14589554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 397
Target Start/End: Complemental strand, 26388336 - 26388202
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 362  Q
    |||||||| |||||| ||||||||  |||||| ||||||| | ||| ||||||||||| ||||||  ||||| || || ||| | || |  |||||||||    
T  26388336 tactccctccggtcactattataagaaaaactccactttttatatatattgaataattaatgtattcagtctataataaagattagatacattaattatt 26388237  T
Q  363 caatgtatctaaaaagtgaagttttatttataata 397  Q
    |||| ||||||||||||  |||||| |||||||||    
T  26388236 caatatatctaaaaagtagagttttgtttataata 26388202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 397
Target Start/End: Complemental strand, 33123140 - 33123022
Alignment:
Q  279 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaag 378  Q
    |||||||| ||||| || |||||| ||||||| | ||||||| | ||||| ||||| ||  | ||||| || |  ||||||||||||||||| |||||||    
T  33123140 tattataagcaaaagtttactttttagatacacttaataattaacgtatcaagtctataaaaaagactagatacattaattattcaatgtatttaaaaag 33123041  T
Q  379 tgaagttttatttataata 397  Q
    ||||||||| |||||||||    
T  33123040 tgaagttttgtttataata 33123022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 10405105 - 10405046
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagta 413  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||||||| |||| |||||    
T  10405105 ttaattatttaatgtatttaaaaaatgaagttttatttataatagtgatcagagagagta 10405046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 279 - 397
Target Start/End: Complemental strand, 14623330 - 14623212
Alignment:
Q  279 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaag 378  Q
    ||||||||| |||||||||||||| |||||||||||| |||| || | |  ||||| || || ||| | || |  | ||||||||||||||||| |||||    
T  14623330 tattataaataaaacttcactttttagatacattgaaaaattaatctgttcagtctataataaagattagatacatgaattattcaatgtatctgaaaag 14623231  T
Q  379 tgaagttttatttataata 397  Q
    |||||||||  ||||||||    
T  14623230 tgaagttttgcttataata 14623212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 279 - 389
Target Start/End: Original strand, 29938627 - 29938736
Alignment:
Q  279 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaag 378  Q
    ||||||||  |||| ||||||||| ||||||||| ||||||| ||||||||||| |  | || ||||| || |  |||||||||||||||||||||||||    
T  29938627 tattataagtaaaatttcactttttagatacatt-aataattaatgtatctagtatacaataaagactagatacattaattattcaatgtatctaaaaag 29938725  T
Q  379 tgaagttttat 389  Q
    |  ||||||||    
T  29938726 tagagttttat 29938736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 30629642 - 30629598
Alignment:
Q  357 attattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    |||||||||| ||||||||||||||| |||| |||||||||||||    
T  30629642 attattcaatctatctaaaaagtgaaattttgtttataatagtga 30629598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 30629597 - 30629642
Alignment:
Q  274 gtcattattataaacaaaacttcacttttcagatacattgaataat 319  Q
    |||| |||||||||||||| ||||||||| ||||| ||||||||||    
T  30629597 gtcactattataaacaaaatttcactttttagatagattgaataat 30629642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 32124270 - 32124214
Alignment:
Q  262 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataa 318  Q
    |||||| |||||||||||||||||| ||||| || |||||| |||| |||| |||||    
T  32124270 atactctcttcggtcattattataagcaaaaattgactttttagattcattcaataa 32124214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 51369582 - 51369340
Alignment:
Q  19 agaagaaaagaaagtggctgttgaggtaccaaggagtgagccagatggggccattaatagggattgtgttgctaaaacattgaggttggtaatagtggat 118  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||| || ||| |||||| | ||| || |||||||||||||||||||||||||||    
T  51369582 agaagaaaagaaagtggctgttgaagtaccaaggagtgagcaagatgggtcctttactagggactctgtagccaaaacattgaggttggtaatagtggat 51369483  T
Q  119 gaggaaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaatacattaaaaacttcattgccactc 218  Q
    |||||||| || |  | |||||| || || ||||| ||||||||  || | ||||||||||||||||||||| ||||||||||| | || || ||  |||    
T  51369482 gaggaaggtagcacgtgcaggaaaaatgctaaagatatgggaaaaattttcagttcaaaagatcttcacaatcaatacattaaagatttaatcgctgctc 51369383  T
Q  219 ttcaaaagtttagagttcattccgacaattaagcatatttcat 261  Q
    ||||||||  ||||||||||||||||| |||||||||||||||    
T  51369382 ttcaaaagcatagagttcattccgacagttaagcatatttcat 51369340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 29954871 - 29955111
Alignment:
Q  19 agaagaaaagaaagtggctgttgaggtaccaaggagtgagccagatggggccattaatagggattgtgttgctaaaacattgaggttggtaatagtggat 118  Q
    |||||||||||| |||||  ||||||||||||||||||||| ||||||| || ||| |||||| |   | ||  ||||||||||||||| ||||||||||    
T  29954871 agaagaaaagaaggtggcaattgaggtaccaaggagtgagcaagatgggtcctttactagggactcgatagcccaaacattgaggttggcaatagtggat 29954970  T
Q  119 gaggaaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaatacattaaaaacttcattgccactc 218  Q
    |||||||||||||| ||  |||| || |||||||| |||| ||||||| | ||||||||||||||||||||||||||||||||| |  |||||||  |||    
T  29954971 gaggaaggaagtatgtatcggaataatgccaaagatatggaaaaggttttcagttcaaaagatcttcacaatgaatacattaaagatgtcattgctgctc 29955070  T
Q  219 ttcaaaagtttagagttcattccgacaattaagcatatttc 259  Q
    ||||||||| |||||||| ||  | ||||||||||||||||    
T  29955071 ttcaaaagtatagagttcgttatgtcaattaagcatatttc 29955111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 260 - 401
Target Start/End: Original strand, 22720498 - 22720639
Alignment:
Q  260 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaatt 359  Q
    ||||| ||||| | |||| |||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||||| ||||||||| | |  ||||||    
T  22720498 atatagtccctcccgtcactattataaacaaaattccactttttagatacattgaataattaatgtatctagtctttattatagactgcatacattaatt 22720597  T
Q  360 attcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    ||||||||||||||||||||| ||||||  ||||||||||||    
T  22720598 attcaatgtatctaaaaagtggagttttgcttataatagtga 22720639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 263 - 416
Target Start/End: Complemental strand, 22720651 - 22720498
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 362  Q
    |||||||| |||||| |||||||| ||||||| ||||||| ||||||||||||||||| ||||||  ||||| || || ||||| || |  |||||||||    
T  22720651 tactccctccggtcactattataagcaaaactccactttttagatacattgaataattaatgtatgcagtctataataaagactagatacattaattatt 22720552  T
Q  363 caatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtatat 416  Q
    |||||||||||||||||| | |||| ||||||||||||| | |||||| |||||    
T  22720551 caatgtatctaaaaagtggaattttgtttataatagtgacgggagggactatat 22720498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 262 - 401
Target Start/End: Original strand, 52673592 - 52673731
Alignment:
Q  262 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattat 361  Q
    ||||||||| | |||| |||||||| |||||||| |||||| ||||| ||||||||||| ||||||||||| |||| |||||  |||| |  ||||||||    
T  52673592 atactccctcccgtcactattataagcaaaactttactttttagatatattgaataattaatgtatctagtttttattatagtatggatacattaattat 52673691  T
Q  362 tcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    ||||||||||||||||||||| ||||  ||||||||||||    
T  52673692 tcaatgtatctaaaaagtgaaattttgcttataatagtga 52673731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 260 - 401
Target Start/End: Original strand, 22768136 - 22768277
Alignment:
Q  260 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaatt 359  Q
    |||| |||||| |||||| |||||||| ||||||| ||  ||| ||||||||||||||||| |||||||||||||||| ||||||||| |    ||||||    
T  22768136 atatgctccctccggtcactattataagcaaaactccatattttagatacattgaataattaatgtatctagtctttattatagactgcattcattaatt 22768235  T
Q  360 attcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    ||||||||||||||||||||| ||| || |||||| ||||||    
T  22768236 attcaatgtatctaaaaagtgtagtgttgtttatagtagtga 22768277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 261 - 414
Target Start/End: Complemental strand, 52673745 - 52673592
Alignment:
Q  261 tatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaatta 360  Q
    |||||||  |||||||| |||||||| ||||| ||||||||| ||||||||||||||||| ||||||| |  || || || | ||| || |  |||||||    
T  52673745 tatactcatttcggtcactattataagcaaaatttcactttttagatacattgaataattaatgtatccatactataataaaaactagatacattaatta 52673646  T
Q  361 ttcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtat 414  Q
    |||||| |||||||||||| |||||||  |||||||||||| | ||||||||||    
T  52673645 ttcaatatatctaaaaagtaaagttttgcttataatagtgacgggagggagtat 52673592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 263 - 401
Target Start/End: Complemental strand, 22768289 - 22768151
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 362  Q
    |||||||| |||||| || ||||||||| ||| ||||||| ||||||||||||||||| ||| ||  ||||| || || ||||| || |  |||||||||    
T  22768289 tactccctccggtcactactataaacaacactacactttttagatacattgaataattaatgaatgcagtctataataaagactagatacattaattatt 22768190  T
Q  363 caatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    ||||||||||||||  || ||||||  ||||||||||||    
T  22768189 caatgtatctaaaatatggagttttgcttataatagtga 22768151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 399
Target Start/End: Complemental strand, 41622224 - 41622106
Alignment:
Q  281 ttataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtg 380  Q
    ||||||| |||| ||||||||| ||||||||||||| ||| |||||||||||||||| ||||||||    |   ||||||||||||||||||||||| |     
T  41622224 ttataaataaaagttcactttttagatacattgaatgattaatgtatctagtctttattatagactacgtacactaattattcaatgtatctaaaaaata 41622125  T
Q  381 aagttttatttataatagt 399  Q
     | ||||| ||||||||||    
T  41622124 gatttttacttataatagt 41622106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 263 - 401
Target Start/End: Original strand, 44626157 - 44626293
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 362  Q
    |||||||| |||||| |||||||| ||||| || | |||||||||||||||||||| | ||||||||||||| || ||||  |   | |  |||||||||    
T  44626157 tactccctccggtcactattataatcaaaattttatttttcagatacattgaataactaatgtatctagtctatattataacc--aaaaaattaattatt 44626254  T
Q  363 caatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    || | ||| | ||||||||||||||| ||||||||||||    
T  44626255 cagtatatttgaaaagtgaagttttacttataatagtga 44626293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 413
Target Start/End: Original strand, 41622128 - 41622242
Alignment:
Q  299 ttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatag 398  Q
    |||| |||||||||||||||||  ||||  |||||| || || ||||| || |  ||||| ||||||||||||||||||||||| ||||||||||||  |    
T  41622128 tttttagatacattgaataattagtgtacgtagtctataataaagactagatacattaatcattcaatgtatctaaaaagtgaacttttatttataactg 41622227  T
Q  399 tgatgagagggagta 413  Q
    ||||  |||||||||    
T  41622228 tgatcggagggagta 41622242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 2198042 - 2198107
Alignment:
Q  262 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 327  Q
    ||||||||| |||||| |||||||| ||||||| ||||||| ||||||||||||||||| ||||||    
T  2198042 atactccctccggtcactattataagcaaaactccactttttagatacattgaataattaatgtat 2198107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 22923654 - 22923721
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatcta 330  Q
    |||||||| |||||| |||||||| ||||||| || |||| ||||||||||||||||| |||||||||    
T  22923654 tactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatcta 22923721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 22928307 - 22928374
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatcta 330  Q
    |||||||| |||||| |||||||| ||||||| || |||| ||||||||||||||||| |||||||||    
T  22928307 tactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatcta 22928374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 22984586 - 22984653
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatcta 330  Q
    |||||||| |||||| |||||||| ||||||| || |||| ||||||||||||||||| |||||||||    
T  22984586 tactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatcta 22984653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 22998174 - 22998241
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatcta 330  Q
    |||||||| |||||| |||||||| ||||||| || |||| ||||||||||||||||| |||||||||    
T  22998174 tactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatcta 22998241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 2198102 - 2198042
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtat 414  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||||||   ||||||||||    
T  2198102 ttaattattcaatgtatctaaaaagtggagttttgcttataatagtgaccggagggagtat 2198042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 5970275 - 5970348
Alignment:
Q  260 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtc 333  Q
    ||||||||||||||||| |  |||||||  ||| || |||||| ||||||||||||||||  ||||||||||||    
T  5970275 atatactcccttcggtcctatttataaaagaaagttgactttttagatacattgaataatgtatgtatctagtc 5970348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 15794818 - 15794757
Alignment:
Q  354 ttaattattcaatgtatctaaaa-agtgaagttttatttataatagtgatgagagggagtat 414  Q
    ||||||||||||||||||||||| | |||| ||||| |||||||||||||  ||||||||||    
T  15794818 ttaattattcaatgtatctaaaacaatgaaattttacttataatagtgattggagggagtat 15794757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 402
Target Start/End: Complemental strand, 39396875 - 39396827
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgat 402  Q
    |||||||| | |||||| |||||||||||||||| ||||||||||||||    
T  39396875 ttaattatcccatgtatttaaaaagtgaagttttgtttataatagtgat 39396827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 39396832 - 39396884
Alignment:
Q  279 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctag 331  Q
    |||||||||||||||||||||||| | |||||| | |||||| ||||||||||    
T  39396832 tattataaacaaaacttcactttttaaatacatgggataattaatgtatctag 39396884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 2198122 - 2198180
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagta 413  Q
    ||||||||||||||||| ||||||||||||||||  || ||||||||||  |||||||||    
T  2198122 ttaattattcaatgtatttaaaaagtgaagttttgctt-taatagtgatcggagggagta 2198180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 22923713 - 22923666
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    |||||||||||||||||||||||| || ||||||  ||||||||||||    
T  22923713 ttaattattcaatgtatctaaaaattggagttttgcttataatagtga 22923666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 22928366 - 22928319
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    |||||||||||||||||||||||| || ||||||  ||||||||||||    
T  22928366 ttaattattcaatgtatctaaaaattggagttttgcttataatagtga 22928319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 22984645 - 22984598
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    |||||||||||||||||||||||| || ||||||  ||||||||||||    
T  22984645 ttaattattcaatgtatctaaaaattggagttttgcttataatagtga 22984598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 22998233 - 22998186
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    |||||||||||||||||||||||| || ||||||  ||||||||||||    
T  22998233 ttaattattcaatgtatctaaaaattggagttttgcttataatagtga 22998186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 49083047 - 49083105
Alignment:
Q  273 ggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagt 332  Q
    ||||| |||||||| |||||||||| |||| |||| |||||||||||| |||||||||||    
T  49083047 ggtcactattataagcaaaacttcattttt-agatgcattgaataattaatgtatctagt 49083105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 15794800 - 15794842
Alignment:
Q  304 agatacattgaataattcatgtatctagtctttagtatagact 346  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||    
T  15794800 agatacattgaataattaatgtatctggtctttattatagact 15794842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 50485791 - 50485833
Alignment:
Q  364 aatgtatctaaaaagtgaagttttatttataatagtgatgaga 406  Q
    ||||||||||||||||||| |||  ||||||||||||||||||    
T  50485791 aatgtatctaaaaagtgaaatttagtttataatagtgatgaga 50485833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 332
Target Start/End: Original strand, 52299073 - 52299141
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagt 332  Q
    ||||| |||| ||||||||||||| ||||| || |||||| | ||||||||||||||| |||||| ||||    
T  52299073 tactctcttccgtcattattataagcaaaattttacttttta-atacattgaataattaatgtatttagt 52299141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 402
Target Start/End: Complemental strand, 6131484 - 6131436
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgat 402  Q
    ||||||||| ||||||| |||||||| |||||||  |||||||||||||    
T  6131484 ttaattatttaatgtatttaaaaagtaaagttttgattataatagtgat 6131436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 414
Target Start/End: Complemental strand, 22020166 - 22020110
Alignment:
Q  358 ttattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtat 414  Q
    ||||| |||| |||||||||||||| ||||  ||||||||||||  |||||||||||    
T  22020166 ttattgaatgaatctaaaaagtgaacttttgcttataatagtgaccagagggagtat 22020110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 22923764 - 22923712
Alignment:
Q  260 atatactcccttcggtcattattataaacaaaacttcacttttcagatacatt 312  Q
    ||||||||||| |||||| |||||||||||||| | || |||| |||||||||    
T  22923764 atatactccctccggtcactattataaacaaaattccattttttagatacatt 22923712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 22928417 - 22928365
Alignment:
Q  260 atatactcccttcggtcattattataaacaaaacttcacttttcagatacatt 312  Q
    ||||||||||| |||||| |||||||||||||| | || |||| |||||||||    
T  22928417 atatactccctccggtcactattataaacaaaattccattttttagatacatt 22928365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 22984696 - 22984644
Alignment:
Q  260 atatactcccttcggtcattattataaacaaaacttcacttttcagatacatt 312  Q
    ||||||||||| |||||| |||||||||||||| | || |||| |||||||||    
T  22984696 atatactccctccggtcactattataaacaaaattccattttttagatacatt 22984644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 22998284 - 22998232
Alignment:
Q  260 atatactcccttcggtcattattataaacaaaacttcacttttcagatacatt 312  Q
    ||||||||||| |||||| |||||||||||||| | || |||| |||||||||    
T  22998284 atatactccctccggtcactattataaacaaaattccattttttagatacatt 22998232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 34016165 - 34016224
Alignment:
Q  272 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagt 332  Q
    |||||| ||||||| |||||  ||  |||||||||||||||||| ||||||||||||||||    
T  34016165 cggtcactattatagacaaatattatcttttcagatacattgaa-aattcatgtatctagt 34016224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 35884403 - 35884359
Alignment:
Q  357 attattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    ||||||||||||||||||||||| ||  ||| |||||||||||||    
T  35884403 attattcaatgtatctaaaaagtcaaagtttgtttataatagtga 35884359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 35884474 - 35884418
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataat 319  Q
    |||||| | |||||| |||||||||||||  || |||||| ||||||||||||||||    
T  35884474 tactccttccggtcactattataaacaaactttgactttttagatacattgaataat 35884418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 35884418 - 35884462
Alignment:
Q  357 attattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    ||||||||||||||||||||||| ||  ||| |||||||||||||    
T  35884418 attattcaatgtatctaaaaagtcaaagtttgtttataatagtga 35884462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 414
Target Start/End: Complemental strand, 39897159 - 39897103
Alignment:
Q  358 ttattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtat 414  Q
    |||||||||| |||||||||||||  ||||| || ||||||||| ||||||| ||||    
T  39897159 ttattcaatgaatctaaaaagtgattttttacttctaatagtgacgagagggtgtat 39897103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 11532184 - 11532406
Alignment:
Q  19 agaagaaaagaaagtggctgttgaggtaccaaggagtgagccagatggggccattaatagggattgtgttgctaaaacattgaggttggtaatagtggat 118  Q
    ||||||||||||||||||| ||||||||||||||||||||  ||| ||| || ||| |||||| |  || || ||||||||||||||||||||| |||||    
T  11532184 agaagaaaagaaagtggctattgaggtaccaaggagtgagaaagacgggtcctttactagggactcagtagccaaaacattgaggttggtaataatggat 11532283  T
Q  119 gaggaaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaatacattaaaaacttcattgccactc 218  Q
    |||||||||||||  ||||| ||||| |||||||| |||||||||||| | ||||||||||||||||||||| |||||||| || | || ||||   |||    
T  11532284 gaggaaggaagtacgtacagaaacaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatcaatacattgaagattttattgttgctc 11532383  T
Q  219 ttcaaaagtttagagttcattcc 241  Q
    ||||||||| |||||||||||||    
T  11532384 ttcaaaagtatagagttcattcc 11532406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 259 - 379
Target Start/End: Complemental strand, 35239802 - 35239682
Alignment:
Q  259 catatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaat 358  Q
    |||||||||  |||||||| |||||||| ||||| || || ||| |||||||||||||| || |||||||||||||||| ||||||||  | |  |||||    
T  35239802 catatactctgttcggtcactattataaccaaaatttgacattttagatacattgaatagttaatgtatctagtctttattatagacttaatacattaat 35239703  T
Q  359 tattcaatgtatctaaaaagt 379  Q
    |||||||||||||||||||||    
T  35239702 tattcaatgtatctaaaaagt 35239682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 377
Target Start/End: Original strand, 50334923 - 50335030
Alignment:
Q  270 ttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgta 369  Q
    |||||| | |||||||||||||||||||| ||| ||||||||||||||||| ||||||||| |||||| |||||  || | |  ||||||||||||| ||    
T  50334923 ttcggttaatattataaacaaaacttcacattttagatacattgaataattaatgtatctaatctttattataggttgtatacattaattattcaatata 50335022  T
Q  370 tctaaaaa 377  Q
    ||||||||    
T  50335023 tctaaaaa 50335030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 399
Target Start/End: Complemental strand, 29497471 - 29497369
Alignment:
Q  297 acttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataat 396  Q
    |||||| |||||||||||| |||| || ||||||||||||| | ||||||| | |  ||||||| |||||||||||||||||| || ||||  |||||||    
T  29497471 actttttagatacattgaacaattaatatatctagtctttattgtagactgaatacattaattagtcaatgtatctaaaaagtaaaattttgcttataat 29497372  T
Q  397 agt 399  Q
    |||    
T  29497371 agt 29497369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 263 - 371
Target Start/End: Original strand, 32186884 - 32186992
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 362  Q
    ||||| || |||||| | |||||||||||| ||||||||| | |||||| |||||||| |||||| ||||||||| |||| ||| || |  ||||||||     
T  32186884 tactctctccggtcactgttataaacaaaatttcactttttaaatacatggaataattaatgtatatagtctttattataaactagatacattaattatc 32186983  T
Q  363 caatgtatc 371  Q
    |||||||||    
T  32186984 caatgtatc 32186992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 401
Target Start/End: Original strand, 35239682 - 35239786
Alignment:
Q  297 acttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataat 396  Q
    |||||| ||||||||||||||||| ||||||  ||||| || || ||||| || |  |||| |||||||||||||||||| || || ||||  |||||||    
T  35239682 actttttagatacattgaataattaatgtattaagtctataataaagactagatacattaactattcaatgtatctaaaatgtcaaattttggttataat 35239781  T
Q  397 agtga 401  Q
    |||||    
T  35239782 agtga 35239786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 50334975 - 50334932
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataata 397  Q
    ||||||||||||||||||||||| |||||||||| |||||||||    
T  50334975 ttaattattcaatgtatctaaaatgtgaagttttgtttataata 50334932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 379
Target Start/End: Original strand, 29497371 - 29497471
Alignment:
Q  279 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaag 378  Q
    |||||||| ||||| || |||||| ||||||||||| ||||| ||||||  |||||  | || ||||| || |  |||||| ||||||||||||||||||    
T  29497371 tattataagcaaaattttactttttagatacattgactaattaatgtattcagtctacaataaagactagatatattaattgttcaatgtatctaaaaag 29497470  T
Q  379 t 379  Q
    |    
T  29497471 t 29497471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 401
Target Start/End: Complemental strand, 32186992 - 32186896
Alignment:
Q  305 gatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    ||||||||| |||||| ||||||||||| | || || |||||  | |  |||||||||| |||||| ||||||||||| |||| ||||||| |||||    
T  32186992 gatacattggataattaatgtatctagtttataataaagactatatacattaattattccatgtatttaaaaagtgaaattttgtttataacagtga 32186896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 36344582 - 36344518
Alignment:
Q  262 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgta 326  Q
    ||||||||| || ||| |||||||||||||| |  |||||| ||||||||||||||||| |||||    
T  36344582 atactccctccgatcaatattataaacaaaattatactttttagatacattgaataattaatgta 36344518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 414
Target Start/End: Original strand, 36344522 - 36344582
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtat 414  Q
    ||||||||||||||||||||||||||  | |||| ||||||||| ||||  ||||||||||    
T  36344522 ttaattattcaatgtatctaaaaagtataattttgtttataatattgatcggagggagtat 36344582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 1779488 - 1779553
Alignment:
Q  262 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 327  Q
    ||||||||| ||||||   ||||||||||||| | |||||| || |||||||||||||| ||||||    
T  1779488 atactccctccggtcacatttataaacaaaacataactttttaggtacattgaataattgatgtat 1779553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 379188 - 379152
Alignment:
Q  297 acttttcagatacattgaataattcatgtatctagtc 333  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  379188 actttttagatacattgaataatttatgtatctagtc 379152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 39836955 - 39836999
Alignment:
Q  358 ttattcaatgtatctaaaaagtgaagttttatttataatagtgat 402  Q
    ||||| |||| ||||||||||| || |||||||||||||||||||    
T  39836955 ttattgaatgaatctaaaaagtaaacttttatttataatagtgat 39836999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 20493006 - 20493245
Alignment:
Q  19 agaagaaaagaaagtggctgttgaggtaccaaggagtgagccagatggggccattaatagggattgtgttgctaaaacattgaggttggtaatagtggat 118  Q
    |||||||| |||| ||||| ||||||||||||||| ||||| ||||||| || ||| |||||| | | | || |||||||||||||||| ||||||||||    
T  20493006 agaagaaaggaaattggctattgaggtaccaaggaatgagcaagatgggtcctttactagggactctatagccaaaacattgaggttggcaatagtggat 20493105  T
Q  119 gaggaaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaatacattaaaaacttcattgccactc 218  Q
    |||||||||||||| || || || || |||||||| ||||||||| || |  ||||||||||||||||||||||||||||||||   |||||||   |||    
T  20493106 gaggaaggaagtatctatagaaaaaatgccaaagatatgggaaagattttcggttcaaaagatcttcacaatgaatacattaaaggtttcattgatgctc 20493205  T
Q  219 ttcaaaagtttagagttcattccgacaattaagcatattt 258  Q
    | |||||   ||||||||||||| ||||||||||||||||    
T  20493206 tccaaaaacatagagttcattccaacaattaagcatattt 20493245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 195
Target Start/End: Original strand, 1355339 - 1355511
Alignment:
Q  23 gaaaagaaagtggctgttgaggtaccaaggagtgagccagatggggccattaatagggattgtgttgctaaaacattgaggttggtaatagtggatgagg 122  Q
    |||||| ||||||||||||| |||||||||||||||  ||||||| |  ||| |||||| | ||| ||| |  |||||||||||| ||| ||||||||||    
T  1355339 gaaaaggaagtggctgttgaagtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgagg 1355438  T
Q  123 aaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaata 195  Q
    ||||||||| || ||||||||| || |||||  |||| |||||| | |||||||||||| |||||||| ||||    
T  1355439 aaggaagtagtttcaggaacaatgctaaagagttggggaaggttttcagttcaaaagatattcacaatcaata 1355511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 195
Target Start/End: Original strand, 1362233 - 1362397
Alignment:
Q  31 agtggctgttgaggtaccaaggagtgagccagatggggccattaatagggattgtgttgctaaaacattgaggttggtaatagtggatgaggaaggaagt 130  Q
    ||||||||||||||||||||||||||||  ||||||| |  ||| |||||| | ||| ||| |  |||||||||||| ||| ||||||||||||||||||    
T  1362233 agtggctgttgaggtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagt 1362332  T
Q  131 atttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaata 195  Q
    | || ||||||||| || |||||  |||| || ||| | |||||||||||| |||| ||| ||||    
T  1362333 agtttcaggaacaatgctaaagagttggggaaagttttcagttcaaaagatattcataatcaata 1362397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 369
Target Start/End: Complemental strand, 8996900 - 8996792
Alignment:
Q  261 tatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaatta 360  Q
    ||||||| || |||||| |||||||| |||||||  |||||  ||||||||||||||||  |||||| ||||||||| |||||||| || |  |||||||    
T  8996900 tatactctctccggtcactattataagcaaaactctactttctagatacattgaataatcaatgtatatagtctttattatagactagatacattaatta 8996801  T
Q  361 ttcaatgta 369  Q
    |||||||||    
T  8996800 ttcaatgta 8996792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 43100744 - 43100801
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataatt 320  Q
    ||||||||||||||| |||||||| ||||| |||| |||| |||||||||||||||||    
T  43100744 tactcccttcggtcactattataagcaaaaattcattttttagatacattgaataatt 43100801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 402
Target Start/End: Original strand, 8717540 - 8717643
Alignment:
Q  299 ttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatag 398  Q
    |||| ||||||||| ||||||| |||||| ||||||||| |||| ||| || |  ||| ||||||||||||| |||||| | || ||| | |||||||||    
T  8717540 tttttagatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttaacttataatag 8717639  T
Q  399 tgat 402  Q
    ||||    
T  8717640 tgat 8717643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 401
Target Start/End: Original strand, 8996792 - 8996886
Alignment:
Q  307 tacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    |||||||||||||| ||||||||||||| || || |||||  | |  || ||||||||||||||||| |||||  ||||||  ||||||||||||    
T  8996792 tacattgaataattaatgtatctagtctataataaagactatatacattgattattcaatgtatctagaaagtagagttttgcttataatagtga 8996886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 10495780 - 10495722
Alignment:
Q  272 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatcta 330  Q
    |||||| |||||||| ||||| ||||||||| |||||||||||||| || |||||||||    
T  10495780 cggtcactattataagcaaaatttcactttttagatacattgaatatttaatgtatcta 10495722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 8996734 - 8996789
Alignment:
Q  279 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtct 334  Q
    |||||||| ||||| |||  |||| ||||||||||||||||| |||||||||||||    
T  8996734 tattataagcaaaatttcggtttttagatacattgaataattaatgtatctagtct 8996789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 10495730 - 10495777
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    |||| |||||||||||||||||||||||| ||||  ||||||||||||    
T  10495730 ttaaatattcaatgtatctaaaaagtgaaattttgcttataatagtga 10495777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 384
Target Start/End: Original strand, 39792136 - 39792211
Alignment:
Q  309 cattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagt 384  Q
    |||| ||||||| ||||||||||| |||| |||||| | || |  ||||||||||| |||||||||||| ||||||    
T  39792136 cattaaataattaatgtatctagtttttattatagattagatacattaattattcattgtatctaaaaaatgaagt 39792211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 43100803 - 43100756
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    |||||||||||||||||||||||| |||| ||||  ||||||||||||    
T  43100803 ttaattattcaatgtatctaaaaaatgaatttttgcttataatagtga 43100756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 13953911 - 13953862
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacatt 312  Q
    |||||| | |||||| |||||||||||||||||||| ||| |||||||||    
T  13953911 tactccttccggtcactattataaacaaaacttcacattttagatacatt 13953862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 13953862 - 13953899
Alignment:
Q  364 aatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  13953862 aatgtatctaaaatgtgaagttttgtttataatagtga 13953899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 14095118 - 14095069
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacatt 312  Q
    |||||| | |||||| |||||||||||||||||||| ||| |||||||||    
T  14095118 tactccttccggtcactattataaacaaaacttcacattttagatacatt 14095069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 14095069 - 14095106
Alignment:
Q  364 aatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  14095069 aatgtatctaaaatgtgaagttttgtttataatagtga 14095106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 402
Target Start/End: Complemental strand, 8996777 - 8996729
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgat 402  Q
    ||||||||||||||||||||||||  ||| ||||  |||||||||||||    
T  8996777 ttaattattcaatgtatctaaaaaccgaaattttgcttataatagtgat 8996729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 334
Target Start/End: Complemental strand, 20218692 - 20218620
Alignment:
Q  262 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtct 334  Q
    ||||||||| | |||| |||||||| ||| |  |||||||| |||| |||||||||||| ||||||| |||||    
T  20218692 atactccctcctgtcactattataagcaagaaatcactttttagattcattgaataattgatgtatccagtct 20218620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 266 - 400
Target Start/End: Original strand, 26221022 - 26221156
Alignment:
Q  266 tcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaa 365  Q
    ||||| |||||| ||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |||| ||||||  | | |  |||||||||||     
T  26221022 tccctccggtcaatattataaacaaaactttactttttagatacattgaataattaatgtatctagtttttattatagatggtatatattaattattcag 26221121  T
Q  366 tgtatctaaaaagtgaagttttatttataatagtg 400  Q
    ||||||||||||||||||||||| ||||| |||||    
T  26221122 tgtatctaaaaagtgaagttttacttatattagtg 26221156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 278 - 401
Target Start/End: Complemental strand, 21032662 - 21032539
Alignment:
Q  278 ttattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaa 377  Q
    ||||||||||||||| |  |||||| ||||| ||||||||||| |||||||||||||||| ||||||||| | |  ||||||||||||||||| ||||||    
T  21032662 ttattataaacaaaattctactttttagatatattgaataattaatgtatctagtctttattatagactgaatacattaattattcaatgtatataaaaa 21032563  T
Q  378 gtgaagttttatttataatagtga 401  Q
    ||| ||||||  ||||||||||||    
T  21032562 gtggagttttgcttataatagtga 21032539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 272 - 401
Target Start/End: Original strand, 42364224 - 42364353
Alignment:
Q  272 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatc 371  Q
    |||||| | |||||||||||| || |||||| | ||||||||||||||| |||||| ||||||||| |||| ||| || |   |||||||||||||||||    
T  42364224 cggtcactgttataaacaaaaatttactttttaaatacattgaataattaatgtatgtagtctttattataaactagataccctaattattcaatgtatc 42364323  T
Q  372 taaaaagtgaagttttatttataatagtga 401  Q
    ||||||||||||||||  ||||||||||||    
T  42364324 taaaaagtgaagttttgcttataatagtga 42364353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 260 - 401
Target Start/End: Complemental strand, 42364368 - 42364227
Alignment:
Q  260 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaatt 359  Q
    ||||||||| | |||||| |||||||| ||||||||||||||| |||||||||||||||||   ||||||||| | || || |||||  | |  ||||||    
T  42364368 atatactccttccggtcactattataagcaaaacttcactttttagatacattgaataattagggtatctagtttataataaagactacatacattaatt 42364269  T
Q  360 attcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    ||||||||||| |||||||| || |||| ||||||| |||||    
T  42364268 attcaatgtatttaaaaagtaaatttttgtttataacagtga 42364227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 402
Target Start/End: Complemental strand, 29486627 - 29486504
Alignment:
Q  279 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaag 378  Q
    |||||||| |||||  | |||||| ||||||||||||||||| || ||| |||||||||  ||| ||| || |  ||||||||||||||||||||||| |    
T  29486627 tattataagcaaaatctgactttttagatacattgaataattaatatatttagtctttatcataaactagatacattaattattcaatgtatctaaaatg 29486528  T
Q  379 tgaagttttatttataatagtgat 402  Q
    |||| ||||  |||||||||||||    
T  29486527 tgaaattttgcttataatagtgat 29486504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 402
Target Start/End: Original strand, 29486500 - 29486632
Alignment:
Q  270 ttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgta 369  Q
    |||| ||| |||||||| ||||| ||||| ||| ||||||||||||||||| ||||||||||| | |  || |||||  | |  ||||||||||||||||    
T  29486500 ttcgatcactattataagcaaaatttcacattttagatacattgaataattaatgtatctagtttatgataaagactaaatatattaattattcaatgta 29486599  T
Q  370 tctaaaaagtgaagttttatttataatagtgat 402  Q
    |||||||||| |  ||||  |||||||||||||    
T  29486600 tctaaaaagtcagattttgcttataatagtgat 29486632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 263 - 402
Target Start/End: Original strand, 5240221 - 5240359
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 362  Q
    |||||||| |||||| |||||||| ||||| || | |||| ||||||||||||||||| ||||||||||| | || || ||  | || |  |||||||||    
T  5240221 tactccctccggtcactattataagcaaaatttgattttttagatacattgaataattaatgtatctagtatataataaagtttagatacattaattatt 5240320  T
Q  363 caatgtatctaaaaagtgaagttttatttataatagtgat 402  Q
    |||||||||||||||  |||  ||| ||||||||||||||    
T  5240321 caatgtatctaaaaaaagaa-atttgtttataatagtgat 5240359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 274 - 397
Target Start/End: Original strand, 21032538 - 21032661
Alignment:
Q  274 gtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatcta 373  Q
    |||| |||||||| ||||||| ||||||| | ||||||||||||||| ||||||  ||||| || || ||||| || |  ||||||||||||| ||||||    
T  21032538 gtcactattataagcaaaactccactttttatatacattgaataattaatgtattcagtctataataaagactagatacattaattattcaatatatcta 21032637  T
Q  374 aaaagtgaagttttatttataata 397  Q
    ||||||  | |||| |||||||||    
T  21032638 aaaagtagaattttgtttataata 21032661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 401
Target Start/End: Complemental strand, 5240335 - 5240233
Alignment:
Q  299 ttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatag 398  Q
    |||| ||||||||||||||||| |||||||||  ||||| |||| ||| || |  |||||||||||||||||||||||| | || ||||  |||||||||    
T  5240335 tttttagatacattgaataattaatgtatctaaactttattatatactagatacattaattattcaatgtatctaaaaaatcaaattttgcttataatag 5240236  T
Q  399 tga 401  Q
    |||    
T  5240235 tga 5240233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 414
Target Start/End: Complemental strand, 7604325 - 7604182
Alignment:
Q  272 cggtcattattataaacaaaacttcacttttcagatacattgaataa-ttcatgtatctagtctttagtatagactggacagtttaattattcaatgtat 370  Q
    |||||||||||||||  |||| || |||||| ||||| | ||||||| || ||| || ||||||||| |||||||| ||    ||| ||||||| | |||    
T  7604325 cggtcattattataagtaaaatttgactttttagatatactgaataaattaatggatttagtctttattatagacttgatgcattacttattcagtatat 7604226  T
Q  371 ctaaaaagtgaagttttatttataatagtgatgagagggagtat 414  Q
    |||||||||||| ||||  |||||||||||||  ||||||||||    
T  7604225 ctaaaaagtgaaattttgcttataatagtgatcggagggagtat 7604182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 397
Target Start/End: Complemental strand, 26221143 - 26221035
Alignment:
Q  289 aaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagtttta 388  Q
    |||||||||||||| ||||||| ||||||||| || |||    ||| || || | ||| || |  |||||||||||||||||||||||||| |||||||     
T  26221143 aaaacttcactttttagatacactgaataattaatatataccatctataataaaaactagatacattaattattcaatgtatctaaaaagtaaagttttg 26221044  T
Q  389 tttataata 397  Q
    |||||||||    
T  26221043 tttataata 26221035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 36864512 - 36864567
Alignment:
Q  358 ttattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagta 413  Q
    ||||| |||| |||||||||||||| |||||||||||||||||||  |||||||||    
T  36864512 ttattgaatgaatctaaaaagtgaacttttatttataatagtgatcggagggagta 36864567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 394
Target Start/End: Original strand, 12959939 - 12960072
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaat--aattcatgtatctagtctttagtatagactggacagtttaatta 360  Q
    |||||| |||||| | |||| ||||||||||||||| ||| | ||| |||||||  |||| |||||||||||||||| |||||| | || |   ||| ||    
T  12959939 tactccattcggttactattgtaaacaaaacttcacattttaaatatattgaataaaattaatgtatctagtctttattatagaatagatacagtaacta 12960038  T
Q  361 ttcaatgtatctaaaaagtgaagttttatttata 394  Q
    |||  ||||||||| ||||| |||||| ||||||    
T  12960039 ttcgttgtatctaagaagtggagttttgtttata 12960072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 399
Target Start/End: Complemental strand, 892679 - 892560
Alignment:
Q  280 attataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagt 379  Q
    ||||||| ||||| || |||||| | || ||||||||||   ||||||||||| | |||||||||    | |  |||||||||||||| |||||||||||    
T  892679 attataagcaaaaatttacttttaaaattcattgaataacggatgtatctagtatatagtatagaacaaatacattaattattcaatgaatctaaaaagt 892580  T
Q  380 gaagttttatttataatagt 399  Q
    ||| ||||  ||||||||||    
T  892579 gaatttttgcttataatagt 892560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 25713735 - 25713694
Alignment:
Q  372 taaaaagtgaagttttatttataatagtgatgagagggagta 413  Q
    |||||| |||| ||||||||||||||||||| ||||||||||    
T  25713735 taaaaattgaacttttatttataatagtgataagagggagta 25713694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 27895898 - 27895963
Alignment:
Q  269 cttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtct 334  Q
    ||||||||| |||||||||||||| |||| |||| |||| |||| ||||| | |||||| ||||||    
T  27895898 cttcggtcactattataaacaaaagttcattttttagattcatttaataaatgatgtatgtagtct 27895963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 892562 - 892610
Alignment:
Q  279 tattataaacaaaacttcacttttcagatacattgaataattcatgtat 327  Q
    |||||||| ||||| ||||||||| |||| |||||||||||| ||||||    
T  892562 tattataagcaaaaattcactttttagattcattgaataattaatgtat 892610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 263 - 401
Target Start/End: Original strand, 6197821 - 6197959
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 362  Q
    |||||||| ||||||||||||||| ||||||| ||||||| ||||||||| |||| || ||||||||||||||||  ||||| |  | |  |||||||||    
T  6197821 tactccctccggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttatcatagattaaatacattaattatt 6197920  T
Q  363 caatgtatctaaaaagtgaagttttatttataatagtga 401  Q
     |||||||||||||||| |||||||  ||||||||||||    
T  6197921 taatgtatctaaaaagtaaagttttgcttataatagtga 6197959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 262 - 397
Target Start/End: Complemental strand, 6197972 - 6197837
Alignment:
Q  262 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattat 361  Q
    ||||||| | |||||| |||||||| |||||||| |||||| ||||||||| ||||||| |||||| || ||| |  || ||||| || |  |||| |||    
T  6197972 atactccatccggtcactattataagcaaaactttactttttagatacattaaataattaatgtatttaatctatgataaagactagatacattaactat 6197873  T
Q  362 tcaatgtatctaaaaagtgaagttttatttataata 397  Q
    | ||||||||||||||||| ||||||  ||||||||    
T  6197872 ttaatgtatctaaaaagtggagttttgcttataata 6197837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 387
Target Start/End: Complemental strand, 13325237 - 13325116
Alignment:
Q  262 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattat 361  Q
    ||||||||| | |||||||||||||  |||||||||||||| || || ||||||||||  |||||| |||    || |||| ||| || |  ||||||||    
T  13325237 atactccctcctgtcattattataaggaaaacttcactttttaggtatattgaataatcaatgtatttag----tattataaactagatacattaattat 13325142  T
Q  362 tcaatgtatctaaaaagtgaagtttt 387  Q
    |||||||||||||||| |||||||||    
T  13325141 tcaatgtatctaaaaattgaagtttt 13325116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 401
Target Start/End: Original strand, 27939032 - 27939124
Alignment:
Q  309 cattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    |||||||||||  |||||||||||||||| ||||||||||  |  || ||||||||||||||||||||| | || ||||| | ||||||||||    
T  27939032 cattgaataatcaatgtatctagtctttattatagactgggtacattcattattcaatgtatctaaaaaataaaattttactcataatagtga 27939124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 272 - 397
Target Start/End: Original strand, 43140550 - 43140676
Alignment:
Q  272 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtc--tttagtatagactggacagtttaattattcaatgta 369  Q
    |||||| ||||||||||||||| | |||| | ||||||||||||||||| ||||||||| ||  |||| |||  | | || |  |||||||||||| |||    
T  43140550 cggtcactattataaacaaaacattacttattagatacattgaataattaatgtatctaatctttttattattaattagatacattaattattcaa-gta 43140648  T
Q  370 tctaaaaagtgaagttttatttataata 397  Q
    |||||||| ||||||||| |||||||||    
T  43140649 tctaaaaaatgaagttttgtttataata 43140676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 272 - 401
Target Start/End: Complemental strand, 43140683 - 43140553
Alignment:
Q  272 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagt--atagactggacagtttaattattcaatgta 369  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||| ||||||||| |   || |  | ||| | || |  ||||||||||||||||    
T  43140683 cggtcattattataaacaaaacttcattttttagatac-ttgaataattaatgtatctaattaataataaaaagattagatacattaattattcaatgta 43140585  T
Q  370 tctaaaaagtgaagttttatttataatagtga 401  Q
    ||||| |||| | ||||| |||||||||||||    
T  43140584 tctaataagtaatgttttgtttataatagtga 43140553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 263 - 381
Target Start/End: Complemental strand, 11322706 - 11322589
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 362  Q
    |||||||| || ||| |||||||| ||||||| || |||| ||||| ||||||||||| || |||| | |||||| ||||||  ||| |  |||||||||    
T  11322706 tactccctccgatcactattataagcaaaact-caatttttagatatattgaataattaatatatccaatctttattatagatcggatacattaattatt 11322608  T
Q  363 caatgtatctaaaaagtga 381  Q
    ||||| |||||||||||||    
T  11322607 caatgcatctaaaaagtga 11322589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 328
Target Start/End: Original strand, 28205791 - 28205858
Alignment:
Q  261 tatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 328  Q
    |||||||||| ||||   |||||||||||||| || | |||||||||||||||||||||| |||||||    
T  28205791 tatactccctccggttgctattataaacaaaatttaatttttcagatacattgaataattaatgtatc 28205858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 413
Target Start/End: Original strand, 11322589 - 11322706
Alignment:
Q  295 tcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttata 394  Q
    |||||||| |||| |||||||||||| |||||||   ||| || || ||| |||| |  ||||||||||||| |||||||||| || ||||||  |||||    
T  11322589 tcactttttagatgcattgaataattaatgtatccgatctataataaagattggatatattaattattcaatatatctaaaaattg-agttttgcttata 11322687  T
Q  395 atagtgatgagagggagta 413  Q
    ||||||||  |||||||||    
T  11322688 atagtgatcggagggagta 11322706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 1214022 - 1214067
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagt 399  Q
    ||||||||||||| ||||||||||||  ||||||||||||||||||    
T  1214022 ttaattattcaatatatctaaaaagtagagttttatttataatagt 1214067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 13325116 - 13325159
Alignment:
Q  289 aaaacttcacttttcagatacattgaataattcatgtatctagt 332  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||    
T  13325116 aaaacttcaatttttagatacattgaataattaatgtatctagt 13325159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 398
Target Start/End: Complemental strand, 28205895 - 28205808
Alignment:
Q  311 ttgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatag 398  Q
    |||||||||| |||||||||||||||  ||| |||  || |  ||||||||||||||||||| |||| | || |||| ||||||||||    
T  28205895 ttgaataattaatgtatctagtctttgttatggacatgatacattaattattcaatgtatctgaaaaattaaattttgtttataatag 28205808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 158447 - 158493
Alignment:
Q  288 caaaacttcacttttcagatacattgaataattcatgtatctagtct 334  Q
    ||||| ||||||||| ||||||||||||||||| |||||| ||||||    
T  158447 caaaatttcactttttagatacattgaataattaatgtatgtagtct 158493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 387
Target Start/End: Complemental strand, 158481 - 158448
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagtttt 387  Q
    ||||||||||||||||||||||||||||| ||||    
T  158481 ttaattattcaatgtatctaaaaagtgaaatttt 158448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 262 - 416
Target Start/End: Original strand, 4132380 - 4132535
Alignment:
Q  262 atactcccttcggtcattattataaacaaaacttcacttttc-agatacattgaataattcatgtatctagtctttagtatagactggacagtttaatta 360  Q
    ||||||| | |||||| |||||||| ||||| |||||||||  ||||||||||||||||| |||||| |||| |||| ||||||||  | |  |||| ||    
T  4132380 atactccatccggtcaatattataagcaaaatttcacttttttagatacattgaataattaatgtatatagtatttattatagactaaatacattaaata 4132479  T
Q  361 ttcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtatat 416  Q
    ||||||||||||||||||| ||||||| ||||||||| |||  ||||| |||||||    
T  4132480 ttcaatgtatctaaaaagttaagttttgtttataataatgaccagaggaagtatat 4132535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 260 - 397
Target Start/End: Complemental strand, 4132535 - 4132397
Alignment:
Q  260 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaatt 359  Q
    ||||||| |||  ||||||||||||||||||||||| |||||| |||||||||||||| || |||||| |||||| || || | |||  | |  ||||||    
T  4132535 atatacttcctctggtcattattataaacaaaacttaactttttagatacattgaatatttaatgtatttagtctataataaatactatatacattaatt 4132436  T
Q  360 attcaatgtatct-aaaaagtgaagttttatttataata 397  Q
    ||||||||||||| |||||||||| ||||  ||||||||    
T  4132435 attcaatgtatctaaaaaagtgaaattttgcttataata 4132397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 26982758 - 26982823
Alignment:
Q  262 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 327  Q
    ||||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  26982758 atacttccttcggtcactattataagcaaaacttcactttttagatacattgaataattaatgtat 26982823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 26982818 - 26982771
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||    
T  26982818 ttaattattcaatgtatctaaaaagtgaagttttgcttataatagtga 26982771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 416
Target Start/End: Original strand, 38646164 - 38646315
Alignment:
Q  266 tcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaa-ttattca 364  Q
    ||||| |||| | ||||||||  ||||||  |||||| ||||||||||||||||| || ||| || | |||  ||||||| | | |  |||| |||||||    
T  38646164 tccctccggttactattataagtaaaactcaactttttagatacattgaataattaatatatttaatttttgttatagaccgaatacattaaattattca 38646263  T
Q  365 atgtatctaaaaagtgaagttttatttataatagtgatgagagggagtatat 416  Q
    || |||||||| |||||||||||  ||||||||||||  |||||||||||||    
T  38646264 atatatctaaatagtgaagttttgcttataatagtgaccagagggagtatat 38646315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 274 - 416
Target Start/End: Original strand, 41115556 - 41115698
Alignment:
Q  274 gtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatcta 373  Q
    ||||| |||||||  ||||||  |||||  |||||||||||| |||| ||||||||| |||||| |||||| | || |  ||||||||  ||||||| ||    
T  41115556 gtcatcattataagtaaaactgtactttgtagatacattgaacaattaatgtatctaatctttattatagagtagatacattaattatgtaatgtatata 41115655  T
Q  374 aaaagtgaagttttatttataatagtgatgagagggagtatat 416  Q
    |||| | |||||||| |||||||||| |  |||| ||||||||    
T  41115656 aaaaattaagttttacttataatagttaccagagagagtatat 41115698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 332
Target Start/End: Original strand, 21857064 - 21857133
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagt 332  Q
    |||||||| |||||| |||||||| ||||| || |||||| ||| ||||||||||||| |||||||||||    
T  21857064 tactccctccggtcactattataagcaaaagtttactttttagacacattgaataattaatgtatctagt 21857133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 45578065 - 45578005
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtat 414  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||||||  |||| ||||||    
T  45578065 ttaattgttcaatgtatctaaaaagtgaaattttacttataatagtgactagagagagtat 45578005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 34840606 - 34840673
Alignment:
Q  260 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 327  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||| |||| |||| ||||| | ||||||    
T  34840606 atatactccctccggtcattattataagcaaaagttcactttttagattcattcaataaatgatgtat 34840673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 43250425 - 43250472
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||    
T  43250425 ttaattattcaatgtatctaaaaagtaaagttttgcttataatagtga 43250472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 423
Target Start/End: Original strand, 24155643 - 24155712
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtatatgtttcct 423  Q
    ||||||||| |||||||||||||| ||||||||| ||||| ||||||||   ||||||||| || |||||    
T  24155643 ttaattatttaatgtatctaaaaattgaagttttgtttatgatagtgatagaagggagtatttgcttcct 24155712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 38646220 - 38646175
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagt 399  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||    
T  38646220 ttaattattcaatgtatctaaaaagttgagttttacttataatagt 38646175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 43250473 - 43250420
Alignment:
Q  274 gtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 327  Q
    |||| |||||||| |||||||| |||||| ||||||||||||||||| ||||||    
T  43250473 gtcactattataagcaaaactttactttttagatacattgaataattaatgtat 43250420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 24155703 - 24155635
Alignment:
Q  262 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatcta 330  Q
    |||||||||||  ||| ||| ||||||||||||||| |||| ||||||||| ||||||| || ||||||    
T  24155703 atactcccttctatcactatcataaacaaaacttcaatttttagatacattaaataattaatttatcta 24155635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 38646315 - 38646255
Alignment:
Q  260 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataatt 320  Q
    |||||||||||  ||||| |||||||| |||||||||||| || ||||| |||||||||||    
T  38646315 atatactccctctggtcactattataagcaaaacttcactatttagatatattgaataatt 38646255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 11602904 - 11602841
Alignment:
Q  271 tcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtct 334  Q
    ||||||| |||||||||||||| ||||||||| |||| |||| ||||| | |||||| ||||||    
T  11602904 tcggtcactattataaacaaaagttcactttttagattcattcaataaatgatgtatgtagtct 11602841  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 21587839 - 21587897
Alignment:
Q  272 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatcta 330  Q
    |||||| |||||||| ||||||||||||||  |||| |||| ||||||| |||||||||    
T  21587839 cggtcactattataagcaaaacttcactttcaagatgcattaaataattaatgtatcta 21587897  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 401
Target Start/End: Complemental strand, 43250418 - 43250376
Alignment:
Q  359 tattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    ||||||||||||||||||||| |||||||  ||||||||||||    
T  43250418 tattcaatgtatctaaaaagtaaagttttgcttataatagtga 43250376  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 7107745 - 7107709
Alignment:
Q  297 acttttcagatacattgaataattcatgtatctagtc 333  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  7107745 actttttagatacattgaataatttatgtatctagtc 7107709  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 21857222 - 21857162
Alignment:
Q  272 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagt 332  Q
    |||||| |||||||| ||||| |||| |||| ||| | ||||||||||| |||||||||||    
T  21857222 cggtcactattataagcaaaaattcattttttagacatattgaataattaatgtatctagt 21857162  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 29770437 - 29770401
Alignment:
Q  297 acttttcagatacattgaataattcatgtatctagtc 333  Q
    |||||| |||||||||||||||| |||||||||||||    
T  29770437 actttttagatacattgaataatgcatgtatctagtc 29770401  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 40037646 - 40037686
Alignment:
Q  357 attattcaatgtatctaaaaagtgaagttttatttataata 397  Q
    ||||||||||| || |||||||| |||||||||||||||||    
T  40037646 attattcaatgcatttaaaaagtaaagttttatttataata 40037686  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 43250374 - 43250418
Alignment:
Q  273 ggtcattattataaacaaaacttcacttttcagatacattgaata 317  Q
    ||||| |||||||| |||||||| |||||| ||||||||||||||    
T  43250374 ggtcactattataagcaaaactttactttttagatacattgaata 43250418  T

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Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 262 - 411
Target Start/End: Original strand, 8352129 - 8352278
Alignment:
Q  262 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattat 361  Q
    |||||||||  ||||| |||||||| |||||||||| |||| ||||||||||||| ||| ||||||||| | |||| |||||| |  | |  ||||||||    
T  8352129 atactccctctggtcactattataagcaaaacttcattttttagatacattgaatgattaatgtatctaatatttattatagaataaatacattaattat 8352228  T
Q  362 tcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggag 411  Q
    ||||| ||||||||||| ||||||||  |||||||| |||  ||||||||    
T  8352229 tcaatatatctaaaaagggaagttttgcttataataatgacaagagggag 8352278  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 274 - 414
Target Start/End: Complemental strand, 8352269 - 8352129
Alignment:
Q  274 gtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatcta 373  Q
    ||||||||||||| ||||||||| ||||| ||||| ||||||||||| |||||| || ||| || || | | | || |  ||||| ||||||||||||||    
T  8352269 gtcattattataagcaaaacttccctttttagatatattgaataattaatgtatttattctataataaatattagatacattaatcattcaatgtatcta 8352170  T
Q  374 aaaagtgaagttttatttataatagtgatgagagggagtat 414  Q
    |||| |||||||||  ||||||||||||  |||||||||||    
T  8352169 aaaaatgaagttttgcttataatagtgaccagagggagtat 8352129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 263 - 393
Target Start/End: Original strand, 26468289 - 26468419
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 362  Q
    |||||| |||||||| |||||||||||||| ||||||||| | ||||||||||||||| ||||||||| | |||| |||||||   | |  | |||||||    
T  26468289 tactccattcggtcactattataaacaaaatttcactttttaaatacattgaataattaatgtatctaatttttattatagaccatatatatcaattatt 26468388  T
Q  363 caatgtatctaaaaagtgaagttttatttat 393  Q
    ||||||||  |||||||||| ||||| ||||    
T  26468389 caatgtataaaaaaagtgaaattttacttat 26468419  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 366
Target Start/End: Complemental strand, 14773852 - 14773765
Alignment:
Q  279 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaat 366  Q
    |||||||| ||||| || |||||| ||||| |||| |||||| ||||||||||||| || ||||||||||| |   ||||||||||||    
T  14773852 tattataagcaaaatttaactttttagatatattgtataattaatgtatctagtctgtattatagactggatacaataattattcaat 14773765  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 26468348 - 26468301
Alignment:
Q  354 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    ||||||||||||||||| ||||||||||| |||| |||||||||||||    
T  26468348 ttaattattcaatgtatttaaaaagtgaaattttgtttataatagtga 26468301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 401
Target Start/End: Complemental strand, 31635871 - 31635752
Alignment:
Q  282 tataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtga 381  Q
    ||||| ||||| ||||||||| ||||||||||||||| | || |||||||||| || ||   || | | |  || |||||||||||||| ||||||||||    
T  31635871 tataagcaaaatttcactttttagatacattgaataactaatatatctagtctataataagcaccgaatacatttattattcaatgtatataaaaagtga 31635772  T
Q  382 agttttatttataatagtga 401  Q
    ||||||| || |||| ||||    
T  31635771 agttttacttgtaatggtga 31635752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 43731258 - 43731155
Alignment:
Q  269 cttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgt 368  Q
    ||||||| |||||||||| ||||| |||| |||| |||||||||||||| || ||||||||| | |||| || | ||| || |  ||||||||| |||||    
T  43731258 cttcggttattattataagcaaaatttcattttttagatacattgaatagttaatgtatctattttttaataaaaactagatacattaattattgaatgt 43731159  T
Q  369 atct 372  Q
    ||||    
T  43731158 atct 43731155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 387
Target Start/End: Original strand, 31635766 - 31635864
Alignment:
Q  289 aaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagtttt 387  Q
    |||||||||||||| | ||||||||||||||  ||||||   ||  ||| |||||||| || |  ||| ||||||||||||||||||||||||| ||||    
T  31635766 aaaacttcactttttatatacattgaataataaatgtattcggtgcttattatagactagatatattagttattcaatgtatctaaaaagtgaaatttt 31635864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 30800263 - 30800186
Alignment:
Q  324 gtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    ||||||| |||||| ||||||||||| |  ||||| |||||||||||||| ||||| || |||| ||||||| |||||    
T  30800263 gtatctaatctttattatagactggatacattaatcattcaatgtatctagaaagtaaaattttgtttataagagtga 30800186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 5368920 - 5368854
Alignment:
Q  262 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 328  Q
    ||||||||| |||||||  |||||| ||||| || |||||| |||| |||||||||||| |||||||    
T  5368920 atactccctccggtcatatttataagcaaaaattaactttttagatgcattgaataattaatgtatc 5368854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 402
Target Start/End: Original strand, 1659231 - 1659280
Alignment:
Q  354 ttaattattcaatgtatctaaaaag-tgaagttttatttataatagtgat 402  Q
    ||||||||| ||||||||||||||  |||| |||||||||||||||||||    
T  1659231 ttaattatttaatgtatctaaaaaaatgaaattttatttataatagtgat 1659280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 3384319 - 3384356
Alignment:
Q  364 aatgtatctaaaaagtgaagttttatttataatagtga 401  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  3384319 aatgtatctaaaaagtgaatttttatttatattagtga 3384356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 30800342 - 30800289
Alignment:
Q  275 tcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 328  Q
    ||||| ||||||||||||||  |||||| ||||| ||||||||||| |||||||    
T  30800342 tcattgttataaacaaaactctactttttagatatattgaataattaatgtatc 30800289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 411
Target Start/End: Original strand, 32796836 - 32796889
Alignment:
Q  358 ttattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggag 411  Q
    ||||| |||| |||||||||||||| |||| ||||||||||||||  |||||||    
T  32796836 ttattaaatgaatctaaaaagtgaatttttgtttataatagtgatcggagggag 32796889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 402
Target Start/End: Complemental strand, 39969819 - 39969771
Alignment:
Q  356 aattattcaatgtatct--aaaaagtgaagttttatttataatagtgat 402  Q
    |||||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  39969819 aattattcaatgtatcttaaaaaaatgaagttttatttataatattgat 39969771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 38834601 - 38834677
Alignment:
Q  258 tcatatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtct 334  Q
    ||||||||||||| |||||| |||||||| ||||| || | |||| |||| |||| ||||| | |||||| ||||||    
T  38834601 tcatatactccctccggtcactattataagcaaaaatttattttttagattcattaaataaatgatgtatatagtct 38834677  T

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Target: scaffold0155 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 34020 - 33971
Alignment:
Q  263 tactcccttcggtcattattataaacaaaacttcacttttcagatacatt 312  Q
    ||||| |||| |||||||||| || ||||||||||||||| |||||||||    
T  34020 tactcgcttctgtcattattacaagcaaaacttcactttttagatacatt 33971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 77378 - 77414
Alignment:
Q  297 acttttcagatacattgaataattcatgtatctagtc 333  Q
    |||||||||||||||||||||||| |||||| |||||    
T  77378 acttttcagatacattgaataatttatgtatgtagtc 77414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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