View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13429_low_8 (Length: 490)
Name: NF13429_low_8
Description: NF13429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13429_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 162 - 469
Target Start/End: Original strand, 107051 - 107358
Alignment:
| Q |
162 |
acactgaattaattaagtcattgtttaaagttaatgtgtctgcgtctacgtccgtgcttcataagttttgaccctatgtttgatttgattattatggctg |
261 |
Q |
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| T |
107051 |
acacttaattaattaagtcattgtttaaagttaatgtgtatgtgtctatgttcgtgcttcatacgttttgaccctatgtttgatttgattattatggctg |
107150 |
T |
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| Q |
262 |
cctgtaggtgatctgaagaagatcaaccacttggttaagcttgaaggtgctaaggagagattacaactgtttaaggcaaatctacttgaacagggagctt |
361 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107151 |
cctgtaggtgatccgaagaagatcaaccacttggttaagcttgaaggtgctaaggagagattacaactgtttaaggcaaatctacttgaacagggagctt |
107250 |
T |
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| Q |
362 |
ttgattctgttgttcaaggctgtcatggtgtgtttcacactgcatctcccttctatcatgatgtcaaagaccctcaggctgagttgattgatcctgcact |
461 |
Q |
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| T |
107251 |
ttgattctgctgttcaaggctgtcatggtgtgtttcacactgcatctcccttctatcatcatgtcaaagaccctcaggctgagttgattgatcctgcact |
107350 |
T |
|
| Q |
462 |
caacggga |
469 |
Q |
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| T |
107351 |
caacggga |
107358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 106851 - 107005
Alignment:
| Q |
12 |
atgaacagcaacgttgtgtgtgtaactggagcttcaggttacatagcttcatggctcgttcgttaccttctccatcgtggttacactgttaaagccaccg |
111 |
Q |
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| T |
106851 |
atgaacagcaacgttgtgtgtgtaactggagcttcaggttacatagcttcatggctcgttcgttaccttctccatcgtggttacactgttaaagccaccg |
106950 |
T |
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| Q |
112 |
ctcgcgacccaagtaattcattctcttctcttttgatctttataacacaaacact |
166 |
Q |
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| T |
106951 |
ttcgcgacccaagtaattcattctcttctcttttgatctttataacacaaacact |
107005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 262 - 469
Target Start/End: Original strand, 87787 - 87994
Alignment:
| Q |
262 |
cctgtaggtgatctgaagaagatcaaccacttggttaagcttgaaggtgctaaggagagattacaactgtttaaggcaaatctacttgaacagggagctt |
361 |
Q |
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| T |
87787 |
cctgtagatgatcccaagaaggttgaccacttggttaagcttgatggtgctaaggagagattgcaactgttcaaggcaaatctacttgaagaaggtgcct |
87886 |
T |
|
| Q |
362 |
ttgattctgttgttcaaggctgtcatggtgtgtttcacactgcatctcccttctatcatgatgtcaaagaccctcaggctgagttgattgatcctgcact |
461 |
Q |
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| T |
87887 |
ttgattctgttgttcaaggctgtcatggtgtctttcacactgcatctcccttttatcatgatgtcaaggatcctcaggctgaattgattgatcctgctct |
87986 |
T |
|
| Q |
462 |
caacggga |
469 |
Q |
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||| |||| |
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| T |
87987 |
caaaggga |
87994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 87493 - 87595
Alignment:
| Q |
24 |
gttgtgtgtgtaactggagcttcaggttacatagcttcatggctcgttcgttaccttctccatcgtggttacactgttaaagccaccgctcgcgacccaa |
123 |
Q |
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||||||||||| ||||| |||||||||||||| |||||||||||||| || | ||||| |||||||| ||||||||||||||||||| |||||| |||| |
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| T |
87493 |
gttgtgtgtgtgactggcgcttcaggttacatcgcttcatggctcgtccgattgcttcttcatcgtggctacactgttaaagccaccgttcgcgatccaa |
87592 |
T |
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| Q |
124 |
gta |
126 |
Q |
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||| |
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| T |
87593 |
gta |
87595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 29548967 - 29549082
Alignment:
| Q |
289 |
cacttggttaagcttgaaggtgctaaggagagattacaactgtttaaggcaaatctacttgaacagggagcttttgattctgttgttcaaggctgtcatg |
388 |
Q |
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|||||| |||| ||||| ||||| ||||| || || ||||| ||||||||| || |||||||| | || | |||||||||||| ||||||| || |||| |
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| T |
29548967 |
cacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttacttgaagaaggttcctttgattctgttattcaaggatgccatg |
29549066 |
T |
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| Q |
389 |
gtgtgtttcacactgc |
404 |
Q |
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| T |
29549067 |
gtgtctttcatactgc |
29549082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 25933440 - 25933555
Alignment:
| Q |
289 |
cacttggttaagcttgaaggtgctaaggagagattacaactgtttaaggcaaatctacttgaacagggagcttttgattctgttgttcaaggctgtcatg |
388 |
Q |
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||||||||||| ||||| ||||| |||||||| || ||||| ||||||||| |||| | ||| | || ||||||| ||||||||| | || ||| ||| |
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| T |
25933440 |
cacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgactctgttgttgagggttgtgatg |
25933539 |
T |
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| Q |
389 |
gtgtgtttcacactgc |
404 |
Q |
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| T |
25933540 |
gtgtctttcatactgc |
25933555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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