View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1342_high_18 (Length: 478)

Name: NF1342_high_18
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1342_high_18
NF1342_high_18
[»] chr7 (12 HSPs)
chr7 (304-465)||(2335727-2335885)
chr7 (307-465)||(2319330-2319486)
chr7 (314-465)||(2326160-2326311)
chr7 (114-191)||(1087109-1087189)
chr7 (114-191)||(1559083-1559163)
chr7 (114-201)||(2319632-2319719)
chr7 (114-191)||(1594608-1594688)
chr7 (114-192)||(2336004-2336082)
chr7 (114-201)||(1543022-1543112)
chr7 (119-201)||(2327854-2327936)
chr7 (114-174)||(3851657-3851717)
chr7 (114-190)||(3956990-3957066)
[»] scaffold0491 (2 HSPs)
scaffold0491 (114-201)||(7790-7877)
scaffold0491 (114-164)||(3160-3213)
[»] chr8 (4 HSPs)
chr8 (114-201)||(18751414-18751504)
chr8 (114-164)||(18741354-18741407)
chr8 (114-164)||(18746318-18746371)
chr8 (114-191)||(18755528-18755608)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 304 - 465
Target Start/End: Complemental strand, 2335885 - 2335727
Alignment:
Q  304 tcattctcacagaccaatattcagtacgatttaatgattagactcacatgattgtgctacatatgtgtcacgacattaaatataaaagtcttgtgtgaac 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||| | |||| |||| |||||||||||| |||||||     
T  2335885 tcattctcacagaccaatattcagtacgatttaatgattagactca-ttgattgtgctacacatgtttgacgaaattagatataaaagtctagtgtgaag 2335787  T
Q  404 ctggaaaaaatttaaaagcatcatttatgaaggatacatgtgttttctcttttgcatcattc 465  Q
     ||| |||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  2335786 atgg-aaaaatttaatagcattatttatgaaggatacatgt-ttttctcttttgcatcattc 2335727  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 307 - 465
Target Start/End: Complemental strand, 2319486 - 2319330
Alignment:
Q  307 ttctcacagaccaatattcagtacgatttaatgattagactcacatgattgtgctacatatgtgtcacgacattaaatataaaagtcttgtgtgaacctg 406  Q
    ||||||||||||||||||| |||||||| ||||||||||||||  |||| || ||||| |||| ||| ||||||| ||||||||||||||||||||| ||    
T  2319486 ttctcacagaccaatattcggtacgattgaatgattagactcat-tgatagtactacacatgtatcatgacattagatataaaagtcttgtgtgaacatg 2319388  T
Q  407 gaaaaaatttaaaagcatcatttatgaaggatacatgtgttttctcttttgcatcattc 465  Q
    ||||| |||||| |||||||||||||||||| ||| || ||||||| ||||||||||||    
T  2319387 gaaaatatttaatagcatcatttatgaaggagacaagt-ttttctcctttgcatcattc 2319330  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 314 - 465
Target Start/End: Complemental strand, 2326311 - 2326160
Alignment:
Q  314 agaccaatattcagtacgatttaatgattagactcacatgattgtgctacatatgtgtcacgacattaa-atataaaagtcttgtgtgaacctggaaaaa 412  Q
    |||||||||||| ||||||| ||||||||||||| |  |||| |||||||| ||||||||||||||| | | ||||||||||| ||||||| | ||||||    
T  2326311 agaccaatattctgtacgatataatgattagactaat-tgatggtgctacacatgtgtcacgacatttagaaataaaagtcttatgtgaacatagaaaaa 2326213  T
Q  413 att-taaaagcatcatttatgaaggatacatgtgttttctcttttgcatcattc 465  Q
    | | ||||||||||||||| |||||||||||||  |||||| | ||||||||||    
T  2326212 aatgtaaaagcatcatttacgaaggatacatgt-atttctcctatgcatcattc 2326160  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 1087189 - 1087109
Alignment:
Q  114 gcatttgcttccatttgaggttgagatgtcattgtggtag---attgagttcccacgatcaaactgcaaataagaagaaag 191  Q
    |||||||||||||||||| ||||||||||||| |||| ||   ||||||||||||| |||||||||||||||| |||||||    
T  1087189 gcatttgcttccatttgaagttgagatgtcatagtggcagcagattgagttcccacaatcaaactgcaaataataagaaag 1087109  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 1559083 - 1559163
Alignment:
Q  114 gcatttgcttccatttgaggttgagatgtcattgtggtag---attgagttcccacgatcaaactgcaaataagaagaaag 191  Q
    |||||||||||||||||| ||||||||||||  |||| ||   ||||||||||||| |||||||||||||||| |||||||    
T  1559083 gcatttgcttccatttgaagttgagatgtcacagtggcagcggattgagttcccacaatcaaactgcaaataataagaaag 1559163  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 2319719 - 2319632
Alignment:
Q  114 gcatttgcttccatttgaggttgagatgtcattgtggtagattgagttcccacgatcaaactgcaaataagaagaaagagcacccaca 201  Q
    |||||||||||||| |||||||||||||||| || || ||||||||| ||||| || |||   |||||||||||||||| || |||||    
T  2319719 gcatttgcttccatatgaggttgagatgtcactgaggcagattgagtacccacaatgaaaggccaaataagaagaaagaccatccaca 2319632  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 1594688 - 1594608
Alignment:
Q  114 gcatttgcttccatttgaggtt---gagatgtcattgtggtagattgagttcccacgatcaaactgcaaataagaagaaag 191  Q
    |||||||||||||||||| |||   |||||||| || ||| |||||||||||||||  ||| |||||||||||||||||||    
T  1594688 gcatttgcttccatttgaagtttatgagatgtcgttttggcagattgagttcccacagtcagactgcaaataagaagaaag 1594608  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 2336082 - 2336004
Alignment:
Q  114 gcatttgcttccatttgaggttgagatgtcattgtggtagattgagttcccacgatcaaactgcaaataagaagaaaga 192  Q
    |||||||||||||||||| |||||||| ||||||||| ||||||||| || || || ||| | || |||||||||||||    
T  2336082 gcatttgcttccatttgaagttgagatttcattgtggcagattgagtacctacaatgaaaatccagataagaagaaaga 2336004  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 1543022 - 1543112
Alignment:
Q  114 gcatttgcttccatttgaggttgagatgtcattgtg---gtagattgagttcccacgatcaaactgcaaataagaagaaagagcacccaca 201  Q
    |||||||||||||||||| ||||||||||||  |||   |||||||||||||| || ||||||| |||| || ||| |||||||| |||||    
T  1543022 gcatttgcttccatttgaagttgagatgtcacagtgggagtagattgagttccgacaatcaaaccgcaagtaggaaaaaagagcatccaca 1543112  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 2327936 - 2327854
Alignment:
Q  119 tgcttccatttgaggttgagatgtcattgtggtagattgagttcccacgatcaaactgcaaataagaagaaagagcacccaca 201  Q
    ||||||||||||| |||||||||||||||    |||| |||| |||| ||||||||  ||| |||||||||||| ||||||||    
T  2327936 tgcttccatttgaagttgagatgtcattgccccagatcgagtccccatgatcaaaccccaagtaagaagaaagaccacccaca 2327854  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 3851717 - 3851657
Alignment:
Q  114 gcatttgcttccatttgaggttgagatgtcattgtggtagattgagttcccacgatcaaac 174  Q
    |||||||||||||||||| |||||||||||| | ||| | ||||||| |||| || |||||    
T  3851717 gcatttgcttccatttgaagttgagatgtcactatggcaaattgagtccccatgaacaaac 3851657  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 3956990 - 3957066
Alignment:
Q  114 gcatttgcttccatttgaggttgagatgtcattgtggtagattgagttcccacgatcaaactgcaaataagaagaaa 190  Q
    |||||||||||||||||| |||||||||||| | ||  | ||||||| |||| || |||||  ||| ||||||||||    
T  3956990 gcatttgcttccatttgaagttgagatgtcactatgacaaattgagtccccatgaacaaaccccaagtaagaagaaa 3957066  T

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Target: scaffold0491 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 7790 - 7877
Alignment:
Q  114 gcatttgcttccatttgaggttgagatgtcattgtggtagattgagttcccacgatcaaactgcaaataagaagaaagagcacccaca 201  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||| | | ||||| ||||||||||||||||| || |||||    
T  7790 gcatttgcttccatttgaagttgagatgtcattgtggcagattgagttccctcaaccaaaccgcaaataagaagaaagaccatccaca 7877  T

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Target: scaffold0491; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 3160 - 3213
Alignment:
Q  114 gcatttgcttccatttgaggttga---gatgtcattgtggtagattgagttccc 164  Q
    |||||||||||||||||| |||||   ||||||||||||| |||||||||||||    
T  3160 gcatttgcttccatttgaagttgatgagatgtcattgtggcagattgagttccc 3213  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 18751414 - 18751504
Alignment:
Q  114 gcatttgcttccatttgaggttga---gatgtcattgtggtagattgagttcccacgatcaaactgcaaataagaagaaagagcacccaca 201  Q
    |||||||||||||||||| |||||   ||||||||||||| ||||||||||||| | | ||||| ||||||||||||||||| || |||||    
T  18751414 gcatttgcttccatttgaagttgatgagatgtcattgtggcagattgagttccctcaaccaaaccgcaaataagaagaaagaccatccaca 18751504  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 18741354 - 18741407
Alignment:
Q  114 gcatttgcttccatttgaggttga---gatgtcattgtggtagattgagttccc 164  Q
    |||||||||||||||||| |||||   ||||||||||||| |||||||||||||    
T  18741354 gcatttgcttccatttgaagttgatgagatgtcattgtggcagattgagttccc 18741407  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 18746318 - 18746371
Alignment:
Q  114 gcatttgcttccatttgaggttga---gatgtcattgtggtagattgagttccc 164  Q
    |||||||||||||||||| |||||   ||||||||||||| |||||||||||||    
T  18746318 gcatttgcttccatttgaagttgatgagatgtcattgtggcagattgagttccc 18746371  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 18755528 - 18755608
Alignment:
Q  114 gcatttgcttccatttgaggttgagatgtcattgtgg---tagattgagttcccacgatcaaactgcaaataagaagaaag 191  Q
    ||||||||||||||||||  |||| |||||||||| |    ||||||||||||| |||||| ||  |||||||||||||||    
T  18755528 gcatttgcttccatttgaaattgatatgtcattgtagcaaaagattgagttccctcgatcacaccccaaataagaagaaag 18755608  T

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