View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_high_2 (Length: 645)
Name: NF1342_high_2
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 226 - 550
Target Start/End: Complemental strand, 1785038 - 1784715
Alignment:
| Q |
226 |
acatattatataaattgataatacaattttctgtttactacaagcaaatgaaaacaatggctataattcttgagtttatttatattgtgatccnnnnnnn |
325 |
Q |
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| T |
1785038 |
acatattatataaattgataatacaattttctacttactacatgcaaatgaaaa-aatggctataattcttgagtttatttatattgtggtcctcttttt |
1784940 |
T |
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| Q |
326 |
cactatatttcttgttgtaaccgatgcctatagtaagtaaattttctcatcattttaaaatatattttttaccgtgtaaattattttaatcatcttctaa |
425 |
Q |
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| T |
1784939 |
ttctccatgtctccttgtaaccgatgcctatagtaagccaaatctctcatcattttaaaatatattttttaccgtgtaaattattttaatcatcttctaa |
1784840 |
T |
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| Q |
426 |
taacattatttaattttatagatattacttgtaattctgcccttgattgtgcaagtaatcgatgtattttacctggaatgccgatatgcgtaacaaataa |
525 |
Q |
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| T |
1784839 |
taacattatttaattttatagatattacttgtaattctgcccttgattgtgcaagtaatcgatgtattttacctggaatgccgatatgcgtaacaaataa |
1784740 |
T |
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| Q |
526 |
atgtttatgtgtttaacaggtaatt |
550 |
Q |
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| T |
1784739 |
atgtttatgtgtttagcaggtaatt |
1784715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 1785220 - 1785035
Alignment:
| Q |
13 |
aatatatttatatgagatccttactaaaattaagtgatcaattcaatgagttaaaggacaaatacaacgtatcaatgtgtttaagagacgattacaaatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1785220 |
aatatatttatatgagatccttactaaaattaagtgatcaattcaatgagttaaaggacaaatacaacgtatcaatgtgtttaagagacgattacaaatg |
1785121 |
T |
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| Q |
113 |
gttataactttaaaaatggtttcttacaattctatacatgctnnnnnnntattttattgaaataaattgagcatggagttttacat |
198 |
Q |
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| T |
1785120 |
gttataactttaaaaatggtttcttacaattctatacattctaaaacaatactttattgaaataaatagagcatggagttttacat |
1785035 |
T |
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