View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_high_21 (Length: 433)
Name: NF1342_high_21
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 42699376 - 42699657
Alignment:
| Q |
1 |
tagcgttactacagtacaaaaatgtattaataggtcttacacataattttcgttcacttcttgaaacaaagggttttccagttctgctgcaaaataagaa |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42699376 |
tagcgttagtacagtacaaaaatgtattaataggtcttacacataattttcgttcacttctcgaaacaaagggttttccagttctgctgcaaaataagaa |
42699475 |
T |
|
| Q |
101 |
acagcagctgtaacaaagatgggtgatgactttaagatcgtgaaacgcaagctcactctctaccactctcagaacgacactgtttcaactctaccagttc |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
42699476 |
acagcagctgtgacaaagatgggtgatgactttaagatcgtgaaacgcaagctcactctctaccactctcagaacgatactgtttcaactctaccggttc |
42699575 |
T |
|
| Q |
201 |
ctgaaactaatgccgagaatatattgctattgccagaattgccgaaagaactcatcgacgagatccttgcaagacttcctgt |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42699576 |
ctgaaactaatgccgagaatatattgctattgccagaattgccgaaagaactcatcgacgagattcttgcaagacttcctgt |
42699657 |
T |
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