View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_high_24 (Length: 411)
Name: NF1342_high_24
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 99 - 402
Target Start/End: Complemental strand, 11669518 - 11669215
Alignment:
| Q |
99 |
gagtcttcttcggttattgggacaaccttagcagttatcctaaaatttccttcaacttcaacaataatgttgtttgtagaagtttccctaacaaaggaca |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11669518 |
gagtcttcttcggttattgggacaaccttagcagttatcctaaaatttccttcaacttcaacaataatgttgtttgttgaagtttccctaacaaaggaca |
11669419 |
T |
|
| Q |
199 |
cgcccgatgattcccatttcgcaccttcagattcgtggagggtgatgggttcgccgtcaagggagagggcaaggcgatcttcagagtcatcccatgtggc |
298 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||| ||||||||||||||||||| |
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| T |
11669418 |
cgccggatgattcccatttcgcaccttcagattcgtggagggtgatgggttctccgtcaaaggagatggcaaggcgatccacagagtcatcccatgtggc |
11669319 |
T |
|
| Q |
299 |
tgttttctgggcaccaaggaagagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcgtttcttctacct |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11669318 |
tgttttctgggcaccaaggaagagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcgtttcttctacct |
11669219 |
T |
|
| Q |
399 |
atga |
402 |
Q |
| |
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|||| |
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|
| T |
11669218 |
atga |
11669215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 99 - 402
Target Start/End: Complemental strand, 11655750 - 11655447
Alignment:
| Q |
99 |
gagtcttcttcggttattgggacaaccttagcagttatcctaaaatttccttcaacttcaacaataatgttgtttgtagaagtttccctaacaaaggaca |
198 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11655750 |
gagtcttcttcggttattgggacaaccttagcagttatcctaaaatttccttcaacttcaacaataatgttgtttgttgaagtttccctaacaaaggaca |
11655651 |
T |
|
| Q |
199 |
cgcccgatgattcccatttcgcaccttcagattcgtggagggtgatgggttcgccgtcaagggagagggcaaggcgatcttcagagtcatcccatgtggc |
298 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| ||||||||||||||||||| |
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| T |
11655650 |
cgccggatgattcccatttcgcaccttcagattcgtggagggtgatgggttctccgtcaaatgagatggcaaggcgatccacagagtcatcccatgtggc |
11655551 |
T |
|
| Q |
299 |
tgttttctgggcaccaaggaagagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcgtttcttctacct |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11655550 |
tgttttctgggcaccaaggaagagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcgtttcttctacct |
11655451 |
T |
|
| Q |
399 |
atga |
402 |
Q |
| |
|
|||| |
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|
| T |
11655450 |
atga |
11655447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 99 - 402
Target Start/End: Complemental strand, 11664207 - 11663904
Alignment:
| Q |
99 |
gagtcttcttcggttattgggacaaccttagcagttatcctaaaatttccttcaacttcaacaataatgttgtttgtagaagtttccctaacaaaggaca |
198 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11664207 |
gagtcttcttcggttatagggacaaccttagcagttatcctaaaatttccttcaacttcaacaataatgttgtttgtagaagtttccctaacaaaggata |
11664108 |
T |
|
| Q |
199 |
cgcccgatgattcccatttcgcaccttcagattcgtggagggtgatgggttcgccgtcaagggagagggcaaggcgatcttcagagtcatcccatgtggc |
298 |
Q |
| |
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| || ||||||||||||||||||||||| ||||||| ||| |||||||| || ||||||| |||||||||||| || ||| |||| ||||||||||| | |
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|
| T |
11664107 |
ccccagatgattcccatttcgcaccttctgattcgttgagagtgatgggctcaccgtcaaaggagagggcaagacggtctacagaatcatcccatgttga |
11664008 |
T |
|
| Q |
299 |
tgttttctgggcaccaaggaagagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcgtttcttctacct |
398 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11664007 |
tgttttttgggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcatttcttctacct |
11663908 |
T |
|
| Q |
399 |
atga |
402 |
Q |
| |
|
|||| |
|
|
| T |
11663907 |
atga |
11663904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 99 - 402
Target Start/End: Original strand, 7344289 - 7344592
Alignment:
| Q |
99 |
gagtcttcttcggttattgggacaaccttagcagttatcctaaaatttccttcaacttcaacaataatgttgtttgtagaagtttccctaacaaaggaca |
198 |
Q |
| |
|
||||||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
7344289 |
gagtcttcttcggttataggaacaaccttggcagttattctaaaatttccttcaacttcaacaatgatgttgtttgtagaagtttccctaacaatggaca |
7344388 |
T |
|
| Q |
199 |
cgcccgatgattcccatttcgcaccttcagattcgtggagggtgatgggttcgccgtcaagggagagggcaaggcgatcttcagagtcatcccatgtggc |
298 |
Q |
| |
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| | || ||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |||||||||||||| ||| |||| ||||||||||| | |
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|
| T |
7344389 |
cactagacgattcccatttcgttccttctgattcgtggagggtgatgggttcaccgtcaaaagagagggcaaggcggtctacagaatcatcccatgttga |
7344488 |
T |
|
| Q |
299 |
tgttttctgggcaccaaggaagagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcgtttcttctacct |
398 |
Q |
| |
|
|||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
7344489 |
tgtttttttggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattgtacccatgtgaagtctcttttcatgttcttgtttcttctacca |
7344588 |
T |
|
| Q |
399 |
atga |
402 |
Q |
| |
|
|||| |
|
|
| T |
7344589 |
atga |
7344592 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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