View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1342_high_28 (Length: 369)
Name: NF1342_high_28
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_high_28 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 85 - 369
Target Start/End: Original strand, 40093424 - 40093708
Alignment:
| Q |
85 |
atcaggtcagtcttcacttttgatcgaagactatttattagtcttacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatt |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093424 |
atcaggtcagtcttcacttttgatcgaagactatttgttagtcttacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatt |
40093523 |
T |
|
| Q |
185 |
taggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaattta |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093524 |
taggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaattta |
40093623 |
T |
|
| Q |
285 |
ttgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaatgtca |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093624 |
ttgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaatgtca |
40093708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 135 - 369
Target Start/End: Original strand, 40062843 - 40063077
Alignment:
| Q |
135 |
gttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttc |
234 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||| ||| || |||||||| |
|
|
| T |
40062843 |
gttaatggagttaattctattgatacaggttggcctaaaaggtgaagatttaggtctgtccagtggaagttccgaaggttggaactcacagtctactttc |
40062942 |
T |
|
| Q |
235 |
cctaagaaacaaccattgatttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccact |
334 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40062943 |
cctaagaatcaaccattgatttggtacaaggtaattttattttcaatttattgtttccctttatataagttatggaatttcaaattaaaagaatgccact |
40063042 |
T |
|
| Q |
335 |
atatgaaaaatgttttttgctactaaccaatgtca |
369 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40063043 |
atatgaaaaatgttttttggtactaaccaatgtca |
40063077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 129 - 367
Target Start/End: Original strand, 40081187 - 40081426
Alignment:
| Q |
129 |
tacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagact |
228 |
Q |
| |
|
||||| |||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||| || || |
|
|
| T |
40081187 |
tacattgttaatggagttaattttttcgatacagattggcctaaaaggcgaagatttaggtctgtctagtggaagttctggagggtggaattcacagtct |
40081286 |
T |
|
| Q |
229 |
actttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaac |
328 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||| || |
|
|
| T |
40081287 |
acttaccctaagaaccaaccattggtttggtacaaggtagttttattttcaatttattgtttcccttgatataagtaagggaatttcaaattaaggaaat |
40081386 |
T |
|
| Q |
329 |
gccactatatgaaaaatg-ttttttgctactaaccaatgt |
367 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40081387 |
gccactatatgaaaaatgtttttttgctactaaccaatgt |
40081426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University