View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_high_29 (Length: 366)
Name: NF1342_high_29
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 84 - 267
Target Start/End: Original strand, 42980972 - 42981155
Alignment:
| Q |
84 |
cacagaataattaaactcattatatcattatcataaggtagttgtcttgcatggtgtctgtattaacataaaagattaaagcatgaacctaacagtctta |
183 |
Q |
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| T |
42980972 |
cacagaataatcaaactcattatatcattatcataaggtagttgtcttgcatggtgtctgtattaacataaaagattaaagcatgaacctaacaatctta |
42981071 |
T |
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| Q |
184 |
ccataattcccttaaaattgatagttggattattgattcctttatttctctggtaaacaatttgagccaattgaggaacataat |
267 |
Q |
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| T |
42981072 |
ccataattcccttaaaattgatagttggattattgattcctttatttctctggtaaacaatttgagccaattgaggaacataat |
42981155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 148 - 267
Target Start/End: Original strand, 42974595 - 42974714
Alignment:
| Q |
148 |
aacataaaagattaaagcatgaacctaacagtcttaccataattcccttaaaattgatagttggattattgattcctttatttctctggtaaacaatttg |
247 |
Q |
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| T |
42974595 |
aacataaaagattaaaacatgaatctaaaaagcttaccataaatccctgaaaatttataactggattactgactcccttatttctctggttaacaatttg |
42974694 |
T |
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| Q |
248 |
agccaattgaggaacataat |
267 |
Q |
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| T |
42974695 |
agccaactgaagaacataat |
42974714 |
T |
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