View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1342_high_3 (Length: 645)
Name: NF1342_high_3
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 226 - 550
Target Start/End: Complemental strand, 1785038 - 1784715
Alignment:
| Q |
226 |
acatattatataaattgataatacaattttctgtttactacaagcaaatgaaaacaatggctataattcttgagtttatttatattgtgatccnnnnnnn |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1785038 |
acatattatataaattgataatacaattttctacttactacatgcaaatgaaaa-aatggctataattcttgagtttatttatattgtggtcctcttttt |
1784940 |
T |
|
| Q |
326 |
cactatatttcttgttgtaaccgatgcctatagtaagtaaattttctcatcattttaaaatatattttttaccgtgtaaattattttaatcatcttctaa |
425 |
Q |
| |
|
|| || ||| ||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1784939 |
ttctccatgtctccttgtaaccgatgcctatagtaagccaaatctctcatcattttaaaatatattttttaccgtgtaaattattttaatcatcttctaa |
1784840 |
T |
|
| Q |
426 |
taacattatttaattttatagatattacttgtaattctgcccttgattgtgcaagtaatcgatgtattttacctggaatgccgatatgcgtaacaaataa |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1784839 |
taacattatttaattttatagatattacttgtaattctgcccttgattgtgcaagtaatcgatgtattttacctggaatgccgatatgcgtaacaaataa |
1784740 |
T |
|
| Q |
526 |
atgtttatgtgtttaacaggtaatt |
550 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
1784739 |
atgtttatgtgtttagcaggtaatt |
1784715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 1785223 - 1785035
Alignment:
| Q |
10 |
aataatatatttatatgagatccttactaaaattaagtgatcaattcaatgagttaaaggacaaatacaacgtatcaatgtgtttaagagacgattacaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1785223 |
aataatatatttatatgagatccttactaaaattaagtgatcaattcaatgagttaaaggacaaatacaacgtatcaatgtgtttaagagacgattacaa |
1785124 |
T |
|
| Q |
110 |
atggttataactttaaaaatggtttcttacaattctatacatgctnnnnnnntattttattgaaataaattgagcatggagttttacat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||| |||||||||||||||||| |
|
|
| T |
1785123 |
atggttataactttaaaaatggtttcttacaattctatacattctaaaacaatactttattgaaataaatagagcatggagttttacat |
1785035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 970092 - 970160
Alignment:
| Q |
12 |
taatatatttatatgagatccttactaaaattaagtgatcaattcaatgagttaaaggacaaatacaac |
80 |
Q |
| |
|
|||||| ||||||||| |||||| ||| || ||||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
970092 |
taatatttttatatgacatcctttataagatcaagtgatcaatagaatgaggtaaaggacaaacacaac |
970160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University