View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_high_31 (Length: 354)
Name: NF1342_high_31
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 30 - 338
Target Start/End: Complemental strand, 33120232 - 33119924
Alignment:
| Q |
30 |
agtttctggtacaaaaataataacaaaaacaatggtcatacaactaattactccaaaagccaggaatgtccatgcagtcccaagaagttctatgacagat |
129 |
Q |
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| T |
33120232 |
agtttctgggacaaaaataataacaaaaacaatggccatacaactaattactccaaaagccaggaatgtccatgcagtcccaagaagttctatgacagat |
33120133 |
T |
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| Q |
130 |
aaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttga |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33120132 |
aaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtgtatttcagagttga |
33120033 |
T |
|
| Q |
230 |
taacccatggaacagttcccattcctggtgaaaagaatattatgtagactgctaaaccaactattgccaaccatcctattttgcttggacatccttgtgt |
329 |
Q |
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| T |
33120032 |
taacccatggaaccgttcccattcctggtgaaaagaatattatgtagactgctaaaccaactatcgccaaccatcctatattgcttggacatccttgtgt |
33119933 |
T |
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| Q |
330 |
gtaccaatc |
338 |
Q |
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||||||||| |
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| T |
33119932 |
gtaccaatc |
33119924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 126 - 335
Target Start/End: Complemental strand, 33116924 - 33116715
Alignment:
| Q |
126 |
agataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtatatttcagag |
225 |
Q |
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|||||||||||||||||||||||| ||||| |||| ||| || ||||||| || ||||||||||| | ||||||||||||||||||||| || |||||| |
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| T |
33116924 |
agataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagag |
33116825 |
T |
|
| Q |
226 |
ttgataacccatggaacagttcccattcctggtgaaaagaatattatgtagactgctaaaccaactattgccaaccatcctattttgcttggacatcctt |
325 |
Q |
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| T |
33116824 |
tttatgacccatggaacagtccccattccaggtgaaaagaacagtatatagagagccaatccaatcagtgcaagccaacccaatttgctaggacatcctt |
33116725 |
T |
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| Q |
326 |
gtgtgtacca |
335 |
Q |
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|||| ||||| |
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| T |
33116724 |
gtgtatacca |
33116715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 136 - 277
Target Start/End: Original strand, 21491884 - 21492025
Alignment:
| Q |
136 |
gattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataaccc |
235 |
Q |
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||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||||||||| | ||||| |
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| T |
21491884 |
gattgagaaacaacaaggttggaaacccacactgttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaaccc |
21491983 |
T |
|
| Q |
236 |
atggaacagttcccattcctggtgaaaagaatattatgtaga |
277 |
Q |
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| T |
21491984 |
atggaactgttcccattccaggcgagaagaatatgatgtaga |
21492025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 268
Target Start/End: Original strand, 21558479 - 21558576
Alignment:
| Q |
171 |
tgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataacccatggaacagttcccattcctggtgaaaagaata |
268 |
Q |
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|||||| || |||||||||||||||||||| || ||||| || |||||||||||||| | |||||||||||| ||||||||||||||||| ||||||| |
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| T |
21558479 |
tgttgacgcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaata |
21558576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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