View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1342_high_44 (Length: 294)
Name: NF1342_high_44
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_high_44 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 30 - 284
Target Start/End: Complemental strand, 10335728 - 10335474
Alignment:
| Q |
30 |
gtagccatccattgaagagaaagaagaaagtgagacaattttcatgatttttgttggatccggtccatggttaatgtaatttagaccatagtatttaact |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10335728 |
gtagccatccattgaagagaaagaagaaagtgagacaattttcatgatttttgttggatacggtccatggttaatgtaatttagaccatagtatttaact |
10335629 |
T |
|
| Q |
130 |
ataaattgtataatgtaaactttaaacttgaaataatagaaagtaactgcacctatgtaaactcatgttcaatctaacagttgtgatgtgtgtgatataa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10335628 |
ataaattgtataatgtaaactttaaacttgaaataatagaaagtaactgcacctatgtaaactcatgttcaatctaacagttgtgatgtgtttgatataa |
10335529 |
T |
|
| Q |
230 |
gaagttcataaagtttatgccacacggtgaaaactttatattccttgaagtataa |
284 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10335528 |
gaagttcataaagtttatgccacacggtaaaaactttatattccttgaagtataa |
10335474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 31592763 - 31592830
Alignment:
| Q |
113 |
gaccatagtatttaactataaattgtataatgtaaactttaaacttgaaataatagaaagtaactgca |
180 |
Q |
| |
|
|||| |||||||||| || || ||||||| ||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
31592763 |
gaccgtagtatttaaatacaagttgtatattgtaagccctaaacttgaaataatagaaaggaactgca |
31592830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University