View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_high_45 (Length: 294)
Name: NF1342_high_45
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 29 - 279
Target Start/End: Complemental strand, 37847594 - 37847331
Alignment:
| Q |
29 |
attgttgacatcacattcgcttcggttgaatcaaattgaattcagagggtaagtaagacaatgtttaattacattccaatttccttattatcatcactct |
128 |
Q |
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| T |
37847594 |
attgttgacatcacattcgcttcggttgaatcaaattgaattcagagggtaag----acaatgtttaattacattccaatttccttattatcattactct |
37847499 |
T |
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| Q |
129 |
taagttgtgttcagtcaaactgttattgttgtc-----------------atagcaacataatttctcatagctttttgacaaaatgcataaaaggagct |
211 |
Q |
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| T |
37847498 |
taagttgtgttcagtcaaactgttattgttgtctttgcattgaataattcatagcaacagaatttctcgtagctttttgacaaaatgcataaaaggagct |
37847399 |
T |
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| Q |
212 |
gctgattaataaattcagctttagtatggtgtagtttcagaggatatttaaattcaattcatccctat |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37847398 |
gctgattaataaattcagctttagtatggtgtagtttcagaggatatttaaattcaattcatccctat |
37847331 |
T |
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