View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_high_47 (Length: 283)
Name: NF1342_high_47
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 4643019 - 4643292
Alignment:
| Q |
1 |
cattctctttaggctgcaaaggtgttcttcacagctccttgtttattgtgggagagataggaggcaatgactatggttttcctttgtttcaaacaagtgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4643019 |
cattctctttaggctgcaaaggtgttcttcacagctccttgtttattgtgggagagataggaggcaatgactatggttttcctttgtttcaaacaagtgt |
4643118 |
T |
|
| Q |
101 |
atttggagatcttattacttacgtaccccgagtagtatctgtaatcacttcatcaattagggtaagagtttaattcagtgtttgaaagttgagtagtagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4643119 |
atttggagatcttattacttacgtaccccgagtagtatctgtaatcacttcatcaattagggtaagagtttaattcagtgtttgaaagttgagtagtagt |
4643218 |
T |
|
| Q |
201 |
tatttcagtattctcttatcctcatattaagtttcacattttgaacatttacttgtcacatagtacatattatt |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4643219 |
tatttcagtattctcttatcctcatattaagtttcacattttgaacatttacttgtcacatagtacatattatt |
4643292 |
T |
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