View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_high_48 (Length: 283)
Name: NF1342_high_48
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_high_48 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 143 - 272
Target Start/End: Original strand, 27579468 - 27579597
Alignment:
| Q |
143 |
gaattaacatctacgaagaattaacaaaacatgactccaaacaaaaagtatcagtccagtatgctatacatgaatactatgcttttccgtgtaactctaa |
242 |
Q |
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| T |
27579468 |
gaatcaacatctacgaagaattaacaaaacatgactccaaaaaaaaagtatcagtccagtatgctatacaagaatactatgcttttccgtgtaactctaa |
27579567 |
T |
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| Q |
243 |
tccatggcatacaagactcctttccttcat |
272 |
Q |
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| T |
27579568 |
tccatggcatacaagactcctttccttcat |
27579597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 27579320 - 27579440
Alignment:
| Q |
31 |
agaacctttaaatgaatatatagggcttgataaacatgataaagaagctcatttcatcagcctaaatctgaactttgctaacaaaatgtgttctaaagaa |
130 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27579320 |
agaacctttaaatgaatatatagggcatgagaaacatgataaagaagctcatttcatcagcctaaatatgaactttgctaacaaaatgtgttctaaagaa |
27579419 |
T |
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| Q |
131 |
accaatgcttcagaattaaca |
151 |
Q |
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| T |
27579420 |
accaatgcttcagaattaaca |
27579440 |
T |
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