View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1342_high_49 (Length: 282)

Name: NF1342_high_49
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1342_high_49
NF1342_high_49
[»] chr7 (3 HSPs)
chr7 (43-253)||(18008785-18008995)
chr7 (14-60)||(18009028-18009074)
chr7 (138-191)||(18790908-18790961)
[»] scaffold0989 (1 HSPs)
scaffold0989 (142-228)||(1050-1136)
[»] chr8 (2 HSPs)
chr8 (142-225)||(3507345-3507428)
chr8 (137-192)||(26946912-26946966)
[»] chr2 (1 HSPs)
chr2 (138-193)||(20118240-20118295)
[»] chr3 (2 HSPs)
chr3 (138-235)||(12074373-12074470)
chr3 (138-190)||(15672049-15672101)
[»] chr1 (1 HSPs)
chr1 (138-192)||(36815404-36815458)
[»] chr4 (2 HSPs)
chr4 (138-198)||(4890737-4890797)
chr4 (163-224)||(3640105-3640166)
[»] chr6 (1 HSPs)
chr6 (138-191)||(1510440-1510493)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 43 - 253
Target Start/End: Complemental strand, 18008995 - 18008785
Alignment:
Q  43 ctagaaagcttgttatgtatctagaagggacttgtcatttttaaaaccaaactagcagaagcaagtacaagcaagtaaacaaagatcaaagtgtcctcct 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18008995 ctagaaagcttgttatgtatctagaagggacttgtcatttttaaaaccaaactagtagaagcaagtacaagcaagtaaacaaagatcaaagtgtcctcct 18008896  T
Q  143 cctaaattcctcacaaagttctcactataaccttctccttttccaacaaagtggaatcatagtttcggttctgagaagaaattattacattgtaacagcg 242  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  18008895 cctaaattcctcagaaagttctcactataaccttctccttttccaacaaagtggaatcatagtttaggttctgagaagaaattattacattgtaacaacg 18008796  T
Q  243 agtaatggtgc 253  Q
    |||||||||||    
T  18008795 agtaatggtgc 18008785  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 18009074 - 18009028
Alignment:
Q  14 agggcgtatcacatcgatcatatatgtatctagaaagcttgttatgt 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18009074 agggcgtatcacatcgatcatatatgtatctagaaagcttgttatgt 18009028  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 18790961 - 18790908
Alignment:
Q  138 ctcctcctaaattcctcacaaagttctcactataaccttctccttttccaacaa 191  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  18790961 ctcctcctaaatttctcacaaagttctcactacaaccttctccttttccaacaa 18790908  T

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Target: scaffold0989 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 1136 - 1050
Alignment:
Q  142 tcctaaattcctcacaaagttctcactataaccttctccttttccaacaaagtggaatcatagtttcggttctgagaagaaattatt 228  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| || || ||||||||||| ||||||||    
T  1136 tcctaaattcctcacaaagttctcaatataatcttctccttttccaacaaagtggtatcagagcttaggttctgagaataaattatt 1050  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 3507345 - 3507428
Alignment:
Q  142 tcctaaattcctcacaaagttctcactataaccttctccttttccaacaaagtggaatcatagtttcggttctgagaagaaatt 225  Q
    |||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| || | || || |||||||||||||||||    
T  3507345 tcctcaattcctcacaaagttctcactataaccttcttctttttcaacaaagtggcattagagcttaggttctgagaagaaatt 3507428  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 26946966 - 26946912
Alignment:
Q  137 cctcctcctaaattcctcacaaagttctcactataaccttctccttttccaacaaa 192  Q
    |||||||||||||| |||||||||| |||||||||||||||| | |||||||||||    
T  26946966 cctcctcctaaatttctcacaaagt-ctcactataaccttcttcctttccaacaaa 26946912  T

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Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 20118295 - 20118240
Alignment:
Q  138 ctcctcctaaattcctcacaaagttctcactataaccttctccttttccaacaaag 193  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20118295 ctcctcctaaattcctcacaaagttctcaatataaccttctccttttccaacaaag 20118240  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 12074373 - 12074470
Alignment:
Q  138 ctcctcctaaattcctcacaaagttctcactataaccttctccttttccaacaaagtggaatcatagtttcggttctgagaagaaattattacattgt 235  Q
    ||||||||||||||||||| || ||| ||||||||| ||||||||||||| |||||||| |||| || || |||| |||||||||||| || ||||||    
T  12074373 ctcctcctaaattcctcacgaaattcccactataacattctccttttccatcaaagtggcatcagagcttaggttatgagaagaaattgttccattgt 12074470  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 15672101 - 15672049
Alignment:
Q  138 ctcctcctaaattcctcacaaagttctcactataaccttctccttttccaaca 190  Q
    |||||||||| || ||||||||||| |||||| ||||||||||||||||||||    
T  15672101 ctcctcctaagtttctcacaaagttatcactacaaccttctccttttccaaca 15672049  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 36815458 - 36815404
Alignment:
Q  138 ctcctcctaaattcctcacaaagttctcactataaccttctccttttccaacaaa 192  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||||||||||||    
T  36815458 ctcctcctaaattcctcataaagttctcgctataaccttatccttttccaacaaa 36815404  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 4890797 - 4890737
Alignment:
Q  138 ctcctcctaaattcctcacaaagttctcactataaccttctccttttccaacaaagtggaa 198  Q
    |||||||||||||||||||| | || ||| |||||||||||||||||||||| | ||||||    
T  4890797 ctcctcctaaattcctcacatacttttcattataaccttctccttttccaactatgtggaa 4890737  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 3640105 - 3640166
Alignment:
Q  163 ctcactataaccttctccttttccaacaaagtggaatcatagtttcggttctgagaagaaat 224  Q
    ||||||||||| |||||||||| ||||||||||  |||| || || |||||||| |||||||    
T  3640105 ctcactataacgttctcctttttcaacaaagtgacatcagagcttaggttctgataagaaat 3640166  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 1510493 - 1510440
Alignment:
Q  138 ctcctcctaaattcctcacaaagttctcactataaccttctccttttccaacaa 191  Q
    |||||||||||  ||| |||||||| ||||||| ||||||||||||| ||||||    
T  1510493 ctcctcctaaaccccttacaaagttttcactattaccttctccttttacaacaa 1510440  T

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