View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_high_5 (Length: 644)
Name: NF1342_high_5
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 225 - 549
Target Start/End: Complemental strand, 1785038 - 1784715
Alignment:
| Q |
225 |
acatattatataaattgataatacaattttctgtttactacaagcaaatgaaaacaatggctataattcttgagtttatttatattgtgatccnnnnnnn |
324 |
Q |
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| T |
1785038 |
acatattatataaattgataatacaattttctacttactacatgcaaatgaaaa-aatggctataattcttgagtttatttatattgtggtcctcttttt |
1784940 |
T |
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| Q |
325 |
cactatatttcttgttgtaaccgatgcctatagtaagtaaattttctcatcattttaaaatatattttttaccgtgtaaattattttaatcatcttctaa |
424 |
Q |
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| T |
1784939 |
ttctccatgtctccttgtaaccgatgcctatagtaagccaaatctctcatcattttaaaatatattttttaccgtgtaaattattttaatcatcttctaa |
1784840 |
T |
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| Q |
425 |
taacattatttaattttatagatattacttgtaattctgcccttgattgtgcaagtaatcgatgtattttacctggaatgccgatatgcgtaacaaataa |
524 |
Q |
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| T |
1784839 |
taacattatttaattttatagatattacttgtaattctgcccttgattgtgcaagtaatcgatgtattttacctggaatgccgatatgcgtaacaaataa |
1784740 |
T |
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| Q |
525 |
atgtttatgtgtttaacaggtaatt |
549 |
Q |
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| T |
1784739 |
atgtttatgtgtttagcaggtaatt |
1784715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 1785223 - 1785035
Alignment:
| Q |
10 |
aataatatatttatatgagatccttactaaaattaagtgatcaattcaatgagttaaaggacaaatacaacgtatcaatgtgtttaagagacgattacaa |
109 |
Q |
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| T |
1785223 |
aataatatatttatatgagatccttactaaaattaagtgatcaattcaatgagttaaaggacaaatacaacgtatcaatgtgtttaagagacgattacaa |
1785124 |
T |
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| Q |
110 |
atggttataactttaaaaatggtttcttacaattctatacatgctnnnnnnntattttattgaaataaattgagcatggagttttacat |
198 |
Q |
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| T |
1785123 |
atggttataactttaaaaatggtttcttacaattctatacattctaaaacaatactttattgaaataaatagagcatggagttttacat |
1785035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 970092 - 970160
Alignment:
| Q |
12 |
taatatatttatatgagatccttactaaaattaagtgatcaattcaatgagttaaaggacaaatacaac |
80 |
Q |
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| T |
970092 |
taatatttttatatgacatcctttataagatcaagtgatcaatagaatgaggtaaaggacaaacacaac |
970160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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