View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_high_56 (Length: 265)
Name: NF1342_high_56
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 224
Target Start/End: Original strand, 13121439 - 13121637
Alignment:
| Q |
30 |
ataatatttaaatacaacttgtatattataaaccctaatcttgtacagataatagaaagggactgcacatactctacagtcgaatacctaagtgcag--- |
126 |
Q |
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| T |
13121439 |
ataatatttaaatacaacttgtatgttataaaccctaatcttgtacagataatagaaagggactgcacatactctacagtcgaatacctaagtgcagttg |
13121538 |
T |
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| Q |
127 |
-ccgaacttcattatcaaacattgtgtgtttctgtgattgcattttcgtttctttattcttttgaaccaatatattgctgaaaaatgtggttgaaattg |
224 |
Q |
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| T |
13121539 |
gccgaacttcattatcaaacattgtgtgtttctgtgattgcattttcgtttctttattcttttgaaccaatatattgctgaaaaatgcggttgaaattg |
13121637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 34564881 - 34564949
Alignment:
| Q |
126 |
gccgaacttcattatcaaacattgtgtgtttctgtgattgcattttcgtttctttattcttttgaacca |
194 |
Q |
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| T |
34564881 |
gccgaacttcgttaccaaacatcgtgtgtttttttgtttgcattttcgtttctttattcttttggacca |
34564949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 41810618 - 41810568
Alignment:
| Q |
141 |
caaacattgtgtgtttctgtgattgcattttcgtttctttattcttttgaa |
191 |
Q |
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| T |
41810618 |
caaacattgtgtgtttctctgtttgcattttcatatctttattcttttgaa |
41810568 |
T |
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