View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_high_59 (Length: 256)
Name: NF1342_high_59
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_high_59 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 40094058 - 40093811
Alignment:
| Q |
1 |
gtttcaaaaacgactgtggcacgtggtatctgtgagatgggattaatgtcgcagtcacatcatagatcaagannnnnnnnctcatgtttaaactcttctt |
100 |
Q |
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| T |
40094058 |
gtttcaaaaacgactgtggcacgtggtatctgtgagatgagattaatgtctcaatcacatcatagatcaagattttttttctcatgtttaaactcttctt |
40093959 |
T |
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| Q |
101 |
cattgaaaatttgcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgt |
200 |
Q |
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| T |
40093958 |
cattgaaaatttgcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgt |
40093859 |
T |
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| Q |
201 |
gcaatcggcatttgaagcaacatatgtaggccagtatcgccctatgct |
248 |
Q |
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| T |
40093858 |
gcaatcgacatttgaagcaacatatgtaggccagtatcgcccaatgct |
40093811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 40063426 - 40063180
Alignment:
| Q |
1 |
gtttcaaaaacgactgtggcacgtggtatctgtgagatgggattaatgtcgcagtcacatcatagatcaagannnnnnnnctcatgtttaaactcttctt |
100 |
Q |
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||||||||||||| |||| || ||||||||| ||||||||||||||||| |||||||||| |||||||||| |||||||||||||||| || |
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| T |
40063426 |
gtttcaaaaacgatcgtggtacatggtatctgcgagatgggattaatgtctcagtcacatcgtagatcaagatttttttt-tcatgtttaaactcttttt |
40063328 |
T |
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| Q |
101 |
cattgaaaatttgcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgt |
200 |
Q |
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| T |
40063327 |
cattgaaaatttgcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgt |
40063228 |
T |
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| Q |
201 |
gcaatcggcatttgaagcaacatatgtaggccagtatcgccctatgct |
248 |
Q |
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| T |
40063227 |
gcaatcggcatttgaagcaacatatgtaggccagtatcgcccaatgct |
40063180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 40081776 - 40081531
Alignment:
| Q |
1 |
gtttcaaaaacgactgtggcacgtggtatctgtgagatgggattaatgtcgcagtcacatcatagatcaagannnnnnnnctcatgtttaaactcttctt |
100 |
Q |
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||||||||||||| |||| || ||||||||| ||||| ||||| |||| |||| |||||||||||||||| | |||||||||| || || |
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| T |
40081776 |
gtttcaaaaacgatcgtggtacatggtatctgcaagatgcgattattgtctcagtaacatcatagatcaagattattttctt--tgtttaaacttttttt |
40081679 |
T |
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| Q |
101 |
cattgaaaatttgcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgt |
200 |
Q |
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| T |
40081678 |
tattgaaaatttgcaacacttacaatgtctgtgacggttttccacagttcttgcgacatttagatgaagtataaggtcctctatagttgcatgagtctgt |
40081579 |
T |
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| Q |
201 |
gcaatcggcatttgaagcaacatatgtaggccagtatcgccctatgct |
248 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
40081578 |
gcaaccggcatttgaagcgacatatgtaggccagtatcgcccaatgct |
40081531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 22012538 - 22012581
Alignment:
| Q |
120 |
ttacaatgtctgtgatggttttccacaattcatgtgacatttgg |
163 |
Q |
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| T |
22012538 |
ttacaatgtctgtgatggttttccacaattcttgaggcatttgg |
22012581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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