View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1342_high_9 (Length: 570)
Name: NF1342_high_9
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 66 - 487
Target Start/End: Original strand, 45679227 - 45679643
Alignment:
| Q |
66 |
tcataggcttgttgacttgtttaagaaacaaaaccaaccatatagggtacctcaaattctggaaacctgtgttttgttttatatgttgttgtgttactgc |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45679227 |
tcataggcttgttgacttgtttaagaaacaaaacc----atatagggtacctcaaattctggaaacctgtgttttgttttatatgttgttgtgttactgc |
45679322 |
T |
|
| Q |
166 |
atagattctccatgcatgtaagtcttctgttaattaatatcctaattgattaagtttgcaatcaccgtctaaccgaaccattagcagccaccaattttaa |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45679323 |
atagattctccatgcatgtaagtcttctgttaattaatatcctaattgattaagtttgcaatcaccgtctaaccgaaccattagcagccaacaattttaa |
45679422 |
T |
|
| Q |
266 |
tttagtgcctcttgccacttcaaggttattgttggctgtcctcaatacttcagcaaatccacaatatcaattttcttaagagggatactgtaaataaggt |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45679423 |
tttagtgcctcttgccacttcaaggttatttttggctgtcctcaatacttcagcaaatccacaatatcaatttt-ttaagagggatactgtaaataaggt |
45679521 |
T |
|
| Q |
366 |
actgccttagtccttttctatatatattcgaggatttaatccataaacaattcgagttagaagattaacatactaccaattgattataatctttaaatca |
465 |
Q |
| |
|
||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45679522 |
actacctcagtccttttctatatatattccaggatttaatccataaacaattcgagttagaagattaacatactaccaattgattataatctttaaatca |
45679621 |
T |
|
| Q |
466 |
ttaagaatatatttaacttact |
487 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
45679622 |
ttaagaatatatttaacttact |
45679643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University