View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_11 (Length: 559)
Name: NF1342_low_11
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 459; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 30 - 548
Target Start/End: Original strand, 36199476 - 36199992
Alignment:
| Q |
30 |
caatatattccataatctgttcttgctataaaagtgccaaaccccttttttcagcctaccctacacgaggcacagggtatctgaggcctgtgatgagatg |
129 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36199476 |
caatatcttctataatctgttcttgctataaaagtgccaaaccccttttttcagcctaccctacacgaggcacagggtatctgaggcctttgatgagatg |
36199575 |
T |
|
| Q |
130 |
agagttgccgcaacacaattagattagggaaagattaaatttcatgcctccacctgaaattgaaaaatgaaataagccaaacatcaagctgcgtagtcta |
229 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36199576 |
agagttgccgcaccacaattagattagggaaagattaaatttcatgcctccacctgaaattgaaaaatgaaataagccaaacatcaagctgcgtagtcta |
36199675 |
T |
|
| Q |
230 |
ttatctaaaacataatgaatgttgtttaaaaggtatatgatagtatcaaatgacatttgcagaacagactactaaattttaaaacctgtattccaatgaa |
329 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36199676 |
ttatctaaaacataatgaatgttgtttaaaagatatatgatagtatcaaatgacatttgcagaacagactactaaattttaaaacctgtattccaatgaa |
36199775 |
T |
|
| Q |
330 |
tctgtatgaaaatcaataaagcatcccctaaaatattgagattccctacatagtnnnnnnnnncctatacaattacataattatttatcaggtcaaaaca |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
36199776 |
tctgtatgaaaatcaataaagcatcccctaaaatattgagattccctacatagt-aaaaaaaacctatacaattacataattatttatca-gtcaaaaca |
36199873 |
T |
|
| Q |
430 |
tagtctgttaggatatcccattcaattgatcaaaacacaagatatcaaaagaaattttcttttctcaattttattgatcaatcatcattctaattagaac |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36199874 |
tagtctgttaggatatcccattcaattgatcaaaacacaagatatcaaaagaaattttcttttctcaattttattgatcaatcatcattctaattagaac |
36199973 |
T |
|
| Q |
530 |
cattactttgtttattcat |
548 |
Q |
| |
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||||||||||||||||||| |
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| T |
36199974 |
cattactttgtttattcat |
36199992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 146 - 325
Target Start/End: Original strand, 36209268 - 36209447
Alignment:
| Q |
146 |
aattagattagggaaagattaaatttcatgcctccacctgaaattgaaaaatgaaataagccaaacatcaagctgcgtagtctattatctaaaacataat |
245 |
Q |
| |
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|||||||||| |||| |||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||| |||||| |
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| T |
36209268 |
aattagattaaggaatgattaaatttcacacctccgcctgaaattgaaaaataaaataagccaaacatcaagctacagagtctatcatctaaagcataat |
36209367 |
T |
|
| Q |
246 |
gaatgttgtttaaaaggtatatgatagtatcaaatgacatttgcagaacagactactaaattttaaaacctgtattccaa |
325 |
Q |
| |
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||||| |||||||||| | |||||||||||||||||| | ||||||||| |||||| |||||| |||||||||| |
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|
| T |
36209368 |
gaatggtgtttaaaagagttgagatagtatcaaatgacatcaaccaaacagactaataaattataaaacttgtattccaa |
36209447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 36183859 - 36183971
Alignment:
| Q |
126 |
gatgagagttgccgcaacacaattagattagggaaagattaaatttcatgcctccacctgaaattgaaaaatgaaataagccaaacatcaagctgcgtag |
225 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||||| | || |
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| T |
36183859 |
gatgagagttgacgcaccacaattagattagggaaacattaaatttcaggtctccatctgaaattgaaaaattaaataagccaaacatcaagctagggag |
36183958 |
T |
|
| Q |
226 |
tctattatctaaa |
238 |
Q |
| |
|
||||||||||||| |
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|
| T |
36183959 |
tctattatctaaa |
36183971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 147 - 372
Target Start/End: Original strand, 36196140 - 36196363
Alignment:
| Q |
147 |
attagattagggaaagattaaatttcatgcctccacctgaaattgaaaaatgaaataagccaaacatcaagctgcgtagtctattatctaaaacataatg |
246 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||||||||||||||||| |||||||||||||| |||||| | ||||||| || ||| ||||||| |
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|
| T |
36196140 |
attagattaaggaaagattaaatttca---caccacctgaaattgaaaaataaaataagccaaacaacaagctacagagtctatcatgtaacgcataatg |
36196236 |
T |
|
| Q |
247 |
aatgttgtttaaaaggtatatgatagtatcaaatgacatttgcagaacagactactaaattttaaaacctgtattccaatga-atctgtatgaaaatcaa |
345 |
Q |
| |
|
|||| |||||||||| | |||||||||||||||||| | |||||||||||||||| |||||| ||||| ||| || | |||| |||||| | |
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| T |
36196237 |
aatgatgtttaaaagagttgagatagtatcaaatgacatcaaccaaacagactactaaattataaaactcgtattgcaaggatctgtgtagaaaaatcga |
36196336 |
T |
|
| Q |
346 |
taaagcatcccctaaaatattgagatt |
372 |
Q |
| |
|
||| |||| ||||||||||||||||| |
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|
| T |
36196337 |
caaaacatctcctaaaatattgagatt |
36196363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 432
Target Start/End: Original strand, 36214268 - 36214303
Alignment:
| Q |
397 |
tacaattacataattatttatcaggtcaaaacatag |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
36214268 |
tacaattacataattatttatcaggtcaaaacatag |
36214303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 534
Target Start/End: Original strand, 16958304 - 16958394
Alignment:
| Q |
443 |
tatcccattcaattgatcaaaacacaagatatcaaaagaaattttcttttctcaattttattgatcaatcatcattctaattagaaccatta |
534 |
Q |
| |
|
||||||||||||||||| | |||| ||||||| |||||| | |||||||||||||||| ||||||||| | |||||| |||||| ||||| |
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| T |
16958304 |
tatcccattcaattgataataaca-aagatattcaaagaattcttcttttctcaattttgctgatcaatctttattctagttagaatcatta |
16958394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 30036685 - 30036629
Alignment:
| Q |
477 |
aaagaaattttcttttctcaattttattgatcaatcatcattctaattagaaccatt |
533 |
Q |
| |
|
|||||| | |||||||||||||||| |||||||||| | |||||| |||||| |||| |
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|
| T |
30036685 |
aaagaattcttcttttctcaatttttttgatcaatctttattctatttagaatcatt |
30036629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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