View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1342_low_12 (Length: 550)

Name: NF1342_low_12
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1342_low_12
NF1342_low_12
[»] chr2 (4 HSPs)
chr2 (20-521)||(44226082-44226587)
chr2 (25-521)||(44236895-44237380)
chr2 (30-521)||(44213934-44214406)
chr2 (149-247)||(43462954-43463052)
[»] chr4 (6 HSPs)
chr4 (90-252)||(2901717-2901879)
chr4 (92-251)||(2883150-2883309)
chr4 (98-247)||(2872954-2873103)
chr4 (352-419)||(2883502-2883569)
chr4 (358-420)||(2901384-2901446)
chr4 (391-419)||(2873780-2873808)
[»] chr7 (11 HSPs)
chr7 (98-254)||(39359673-39359829)
chr7 (120-252)||(39551713-39551845)
chr7 (89-235)||(39578117-39578263)
chr7 (124-252)||(39568560-39568688)
chr7 (98-251)||(39625169-39625321)
chr7 (171-251)||(39542498-39542578)
chr7 (98-235)||(39345128-39345265)
chr7 (128-234)||(39592590-39592696)
chr7 (98-235)||(39333849-39333986)
chr7 (376-420)||(39334432-39334476)
chr7 (376-420)||(39568128-39568172)
[»] chr8 (1 HSPs)
chr8 (104-235)||(4496102-4496233)
[»] chr1 (2 HSPs)
chr1 (125-235)||(2152544-2152654)
chr1 (125-235)||(2164800-2164910)


Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 20 - 521
Target Start/End: Complemental strand, 44226587 - 44226082
Alignment:
Q  20 atcataggtggtaaactttatatctaaaattatctaacttggatgccgaatgcttaatttgtacagctaactgggagtgtgacttacaatggccatggac 119  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44226587 atcaaaggtggtaaactttatatctaaaattatctaacttggatgccgaatgcttaatttgtacagctaactgggagtgtgacttacaatggccatggac 44226488  T
Q  120 tgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44226487 tgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaag 44226388  T
Q  220 atgccaaggagttggatcacgttatggttagtctatttttactacctagttaatgttttttaaaatctaatttgaaatgtggctaaagcttaacttgtta 319  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44226387 gtgccaaggagttggatcacgttatggttagtctatttttactacctagttaatgttttttaaaatctaatttgaaatgtggctaaagcttaacttgtta 44226288  T
Q  320 attatttttgggatccaacagacatgctatccgagctttctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtctacatgaaggt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44226287 attatttttgggatccaacagacatgctatccgagctttctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtctacatgaaggt 44226188  T
Q  420 atgcattaaataagctattatcaatcaatatc-gtaa----atagtaattggatatactatactatctttgcatctctaattttattttgatataacagg 514  Q
    |||||||||||||||||||||||||||||||| ||||    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44226187 atgcattaaataagctattatcaatcaatatcggtaatggtatagtaatt-gatatactatactatctttgcatctctaattttattttgatataacagg 44226089  T
Q  515 caattgc 521  Q
    |||||||    
T  44226088 caattgc 44226082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 25 - 521
Target Start/End: Complemental strand, 44237380 - 44236895
Alignment:
Q  25 aggtggtaaactttatatctaaaattatctaacttggatgccgaatgcttaatttgtacagctaactgggagtgtgacttacaatggccatggactgaat 124  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  44237380 aggtggtaaactttatatctaaaattatttaatttggatgccgaattcttaattcgtacagctaactgggagtgtgacttacaatggccatggactgaac 44237281  T
Q  125 gagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgcc 224  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44237280 gagtttgtacctcaaagaactgcggcttatatcagccaacatgatgttcatattggagaaatgactgtgagagaaaccttggctttctcagcaagatgcc 44237181  T
Q  225 aaggagttggatcacgttatggttagtctatttttactacctagttaatgttttttaaaatctaatttgaaatgtggctaaagcttaacttgttaattat 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||         
T  44237180 aaggagttggatcacgttatggttagtctatttttactaccttgttaatgttttttaatatctaatttgaaatgtggctaaagcttaacttgtta----- 44237086  T
Q  325 ttttgggatccaacagacatgctatccgagctttctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtctacatgaaggtatgca 424  Q
               ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  44237085 -----------aacagacatgctatccgagctttctagaagagagaaggcagcaaatatcaagcctgacccagatattgatgtctacatgaaggtatgca 44236997  T
Q  425 ttaaataagctattatcaatcaatatc-gtaa----atagtaattggatatactatactatctttgcatctctaattttattttgatataacaggcaatt 519  Q
    ||||||||||||||||||||||||||| ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44236996 ttaaataagctattatcaatcaatatcggtaatggtatagtaattggatatactatactatctttgcatctctaattttattttgatataacaggcaatt 44236897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 521
Target Start/End: Complemental strand, 44214406 - 44213934
Alignment:
Q  30 gtaaactttatatctaaaattatctaacttggatgccgaatgcttaatttgtacagctaactgggagtgtgacttacaatggccatggactgaatgagtt 129  Q
    |||||||| |||| ||||||||  ||| || ||| || |||| ||||||| || ||||| |||||| |||||| |||||||| || ||||||||||||||    
T  44214406 gtaaacttaatatttaaaattacataattttgatacc-aatgtttaatttatatagctatctgggaatgtgacctacaatggacacggactgaatgagtt 44214308  T
Q  130 tgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaagga 229  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  44214307 tgtacctcaaagaactgctgcttatatcagccagcatgatgttcacattggagaaatgactgtgagggaaaccttagctttctcagcaaggtgccaagga 44214208  T
Q  230 gttggatcacgttatggttagtctatttttactacctagttaatgttttttaaaatctaatttgaaatgtggctaaagcttaacttgttaattatttttg 329  Q
    |||||||| ||||| ||| |||| |  ||||| |||   ||| || |||| |||||||||||||   |||| ||||||||| |||| || | | ||||||    
T  44214207 gttggatctcgttacggtgagtcaa--tttaccaccatattattg-ttttcaaaatctaatttgctgtgtgactaaagcttgacttatt-actgtttttg 44214112  T
Q  330 ggatccaacagacatgctatccgagctttctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtctacatgaaggtatgcattaaa 429  Q
     ||||| |||||||||||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||||    
T  44214111 tgatcc-acagacatgctatctgagctttctagaagagagaaggtagcaaatatcaagcctgacccagatattgatgtctacatgaaggtatacattaaa 44214013  T
Q  430 taagctattatcaatcaatatcgtaaatagtaattggatatactatactatctttgcatctctaattttattttgatataacaggcaattgc 521  Q
    |||| || ||||             |||||||||| ||||||||||||| | ||||||| ||||| | |||||| |||||||||||||||||    
T  44214012 taagataatatc-------------aatagtaattagatatactatactgtatttgcatatctaactgtattttaatataacaggcaattgc 44213934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 43463052 - 43462954
Alignment:
Q  149 gcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggt 247  Q
    |||||||| |||||| ||||||| ||| | || ||||||||||| |  |||||| ||| ||||||||| |||||||||||||||||| |||| ||||||    
T  43463052 gcctatattagccaaaatgatgtacatttgggtgaaatgactgtaaaagaaaccatggatttctcagctagatgccaaggagttggaacacgatatggt 43462954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 90 - 252
Target Start/End: Complemental strand, 2901879 - 2901717
Alignment:
Q  90 ctgggagtgtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgac 189  Q
    ||||||| |||||||| ||||| |||||  || |||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||    
T  2901879 ctgggagagtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgcatatattagtcaacatgatgttcatattggagaaatgac 2901780  T
Q  190 tgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagtc 252  Q
    ||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  2901779 tgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagtc 2901717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 92 - 251
Target Start/End: Original strand, 2883150 - 2883309
Alignment:
Q  92 gggagtgtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactg 191  Q
    ||||| || ||||| ||||| |||||  || |||| ||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||    
T  2883150 gggagagtaacttataatggacatgggatggatgaatttgtacctcagagaactgctgcatatattagtcaacatgatgttcatattggagaaatgactg 2883249  T
Q  192 tgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagt 251  Q
    |||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  2883250 tgagggaaaccttggctttctcagcaaggtgccaaggtgtcggatcacgttatggttagt 2883309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 2872954 - 2873103
Alignment:
Q  98 gtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgaggg 197  Q
    |||||||| |||||  ||||| || |||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||    
T  2872954 gtgacttataatggatatggaatggatgaatttgtacctcaaagaactgctgcatatattagtcaacatgatgttcatattggagaaatgactgttaggg 2873053  T
Q  198 aaaccttggctttctcagcaagatgccaaggagttggatcacgttatggt 247  Q
    |||| ||||||||||||||||| |||||||||||||||||| | ||||||    
T  2873054 aaacattggctttctcagcaaggtgccaaggagttggatcaagatatggt 2873103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 419
Target Start/End: Original strand, 2883502 - 2883569
Alignment:
Q  352 gagctttctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtctacatgaaggt 419  Q
    ||||| ||||||||||| |||| |||||| |||||||| ||||||||| ||||||||| |||||||||    
T  2883502 gagctgtctagaagagaaaaggaagcaaatattaagccagacccagatgttgatgtcttcatgaaggt 2883569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 358 - 420
Target Start/End: Complemental strand, 2901446 - 2901384
Alignment:
Q  358 tctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtctacatgaaggta 420  Q
    ||||||||||| |||| |||||| |||||||| |||||||||||||||||||  |||||||||    
T  2901446 tctagaagagaaaaggaagcaaagattaagccagacccagatattgatgtctttatgaaggta 2901384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 419
Target Start/End: Original strand, 2873780 - 2873808
Alignment:
Q  391 gacccagatattgatgtctacatgaaggt 419  Q
    |||||||||||||||||||||||||||||    
T  2873780 gacccagatattgatgtctacatgaaggt 2873808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 98 - 254
Target Start/End: Original strand, 39359673 - 39359829
Alignment:
Q  98 gtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgaggg 197  Q
    |||||||| ||||| ||||   ||| |||||||||||| |||||||||||||| ||| |    ||| ||||| |||| ||||||||||||||||| || |    
T  39359673 gtgacttataatggtcatgagatgagtgagtttgtaccccaaagaactgctgcttatgtggatcaaaatgatcttcacattggagaaatgactgttagag 39359772  T
Q  198 aaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagtcta 254  Q
    |||||||||| |||||||| |||  ||||||||||||| | ||||||||||||||||    
T  39359773 aaaccttggccttctcagctagagtccaaggagttggacctcgttatggttagtcta 39359829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 120 - 252
Target Start/End: Complemental strand, 39551845 - 39551713
Alignment:
Q  120 tgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaag 219  Q
    ||||||||||||| ||||||||||||||||| ||| |    ||| ||||| |||| ||||||||||||||||| || |||||||||||||||||||||||    
T  39551845 tgaatgagtttgtgcctcaaagaactgctgcttatgtggatcaaaatgatcttcacattggagaaatgactgttagagaaaccttggctttctcagcaag 39551746  T
Q  220 atgccaaggagttggatcacgttatggttagtc 252  Q
       ||||||||||||  | ||||||||||||||    
T  39551745 ggtccaaggagttgggcctcgttatggttagtc 39551713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 39578263 - 39578117
Alignment:
Q  89 actgggagtgtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatga 188  Q
    |||||||  ||||||||||| || ||||   ||||||||||||||||||||||||||||||| ||| | || ||| | ||| |||| ||||||||| |||    
T  39578263 actgggaaggtgacttacaacggtcatgagatgaatgagtttgtacctcaaagaactgctgcttatgtcagtcaaaacgatcttcacattggagaattga 39578164  T
Q  189 ctgtgagggaaaccttggctttctcagcaagatgccaaggagttgga 235  Q
    | || || ||||| ||||  ||||||||||||| |||||| ||||||    
T  39578163 cagttagagaaactttggaattctcagcaagattccaaggtgttgga 39578117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 39568688 - 39568560
Alignment:
Q  124 tgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgc 223  Q
    ||||||||| || ||| |||||||||| ||| |    ||| ||||| |||| |||||||||||||| || || ||||||||||| ||||||||| ||  |    
T  39568688 tgagtttgtcccccaacgaactgctgcatatgtggatcaaaatgatcttcacattggagaaatgacagtaagagaaaccttggccttctcagcacgagtc 39568589  T
Q  224 caaggagttggatcacgttatggttagtc 252  Q
    |||||||||||| | ||||||||||||||    
T  39568588 caaggagttggacctcgttatggttagtc 39568560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 251
Target Start/End: Complemental strand, 39625321 - 39625169
Alignment:
Q  98 gtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgaggg 197  Q
    |||| ||| ||||| |||| | ||||||||||||| || |||||||||||||| ||| | || ||| |||||  |||  |||| ||| ||||||| || |    
T  39625321 gtgagttataatggtcatgaaatgaatgagtttgtgccacaaagaactgctgcttatgtcagtcaaaatgatactcaccttgg-gaattgactgtcagag 39625223  T
Q  198 aaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagt 251  Q
    |||||||||| || |||||||||   |||||||||||| | || ||||||||||    
T  39625222 aaaccttggccttttcagcaagagttcaaggagttggacctcgatatggttagt 39625169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 39542578 - 39542498
Alignment:
Q  171 ttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagt 251  Q
    |||| ||||||||||||||||| || ||||||||||| ||||| |||||   ||||||||||||  | |||||||||||||    
T  39542578 ttcacattggagaaatgactgttagagaaaccttggccttctcggcaagggtccaaggagttgggccgcgttatggttagt 39542498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 98 - 235
Target Start/End: Original strand, 39345128 - 39345265
Alignment:
Q  98 gtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgaggg 197  Q
    |||||||| ||||| ||||   ||| ||| ||||| || |||||||||||||| ||| |    ||| ||||| |||| ||||||||| ||||||| || |    
T  39345128 gtgacttataatggtcatgagatgagtgaatttgtcccccaaagaactgctgcttatgtggatcaaaatgatcttcacattggagaattgactgttagag 39345227  T
Q  198 aaaccttggctttctcagcaagatgccaaggagttgga 235  Q
    |||| ||||| ||||| ||||||  |||||||||||||    
T  39345228 aaacattggccttctcggcaagagtccaaggagttgga 39345265  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 234
Target Start/End: Complemental strand, 39592696 - 39592590
Alignment:
Q  128 tttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaag 227  Q
    |||||||| |||||||||||||| ||| | || ||| ||||| ||||  |||||||| ||||||| || |||||  |||| ||||| ||||||  |||||    
T  39592696 tttgtaccccaaagaactgctgcttatgtcagtcaaaatgatcttcaccttggagaattgactgtcagagaaacgatggccttctccgcaagagtccaag 39592597  T
Q  228 gagttgg 234  Q
    | |||||    
T  39592596 gcgttgg 39592590  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 235
Target Start/End: Original strand, 39333849 - 39333986
Alignment:
Q  98 gtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgaggg 197  Q
    |||||||| ||||| ||||   ||| ||| ||||| || |||||||||||||| ||| |    ||| ||||| |||| ||||||||| ||||||| || |    
T  39333849 gtgacttataatggtcatgagatgagtgaatttgtcccccaaagaactgctgcatatgtggatcaaaatgatcttcacattggagaattgactgttagag 39333948  T
Q  198 aaaccttggctttctcagcaagatgccaaggagttgga 235  Q
    ||||  |||| ||||| ||||||  |||||||||||||    
T  39333949 aaacactggccttctcggcaagagtccaaggagttgga 39333986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 420
Target Start/End: Original strand, 39334432 - 39334476
Alignment:
Q  376 gcaaacattaagcctgacccagatattgatgtctacatgaaggta 420  Q
    ||||| || |||||||| |||||||||||||| ||||||||||||    
T  39334432 gcaaatatcaagcctgatccagatattgatgtgtacatgaaggta 39334476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 39568172 - 39568128
Alignment:
Q  376 gcaaacattaagcctgacccagatattgatgtctacatgaaggta 420  Q
    ||||| || |||||||| |||||||||||||| ||||||||||||    
T  39568172 gcaaatatcaagcctgatccagatattgatgtgtacatgaaggta 39568128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 4496102 - 4496233
Alignment:
Q  104 tacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaacct 203  Q
    |||||||| ||| |||| ||||||||||||||   ||  ||| | || ||||| || ||| ||||||||||| |||||||||||||||| |  |||||||    
T  4496102 tacaatggacatagacttaatgagtttgtaccaagaaagacttcagcatatattagtcaaaatgatgttcatgttggagaaatgactgtaaaagaaacct 4496201  T
Q  204 tggctttctcagcaagatgccaaggagttgga 235  Q
    | | ||| ||||| ||||||||||||||||||    
T  4496202 tagatttttcagctagatgccaaggagttgga 4496233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 2152654 - 2152544
Alignment:
Q  125 gagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgcc 224  Q
    |||||||| || ||||||||  | || ||| |||| ||| |||||  ||| |||||||||||||||||||| |||||  ||||||||||||||||||| |    
T  2152654 gagtttgttccacaaagaacatcagcttatgtaagtcaatatgataatcacattggagaaatgactgtgagagaaacactggctttctcagcaagatgtc 2152555  T
Q  225 aaggagttgga 235  Q
    |||| ||||||    
T  2152554 aaggggttgga 2152544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 2164910 - 2164800
Alignment:
Q  125 gagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgcc 224  Q
    |||||||| || ||||||||  | || |||||||| |||||||||  ||| |||||||||||||| || || |||||| | ||||||||||||||||| |    
T  2164910 gagtttgttccacaaagaacatccgcttatataagtcaacatgataatcacattggagaaatgaccgtaagagaaaccctagctttctcagcaagatgtc 2164811  T
Q  225 aaggagttgga 235  Q
    |||| ||||||    
T  2164810 aaggggttgga 2164800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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