View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_14 (Length: 521)
Name: NF1342_low_14
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_14 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 83 - 431
Target Start/End: Complemental strand, 49521964 - 49521628
Alignment:
| Q |
83 |
tacattggctacataagttaaactaa-cgttcttatggtttgtgaatcaacttctaggtcaatcaacattgacaannnnnnn-gtagtttagaatcataa |
180 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49521964 |
tacattggctacataagttaaactaagcgttcttatggtttgtgaatcaacttctaggtcaatcaacattgacaattttttttgtagtttagaatcataa |
49521865 |
T |
|
| Q |
181 |
caatttaattttattagtaaaaaataaataattttgtaagtataagcaatggcagattattatttaaattttaaagcatgcttaccaaataaatataaaa |
280 |
Q |
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| T |
49521864 |
caatttaattttattagtaaaaaataaataattttgtaagtataagcaacggcagattattatttaaattttaaagcat--------------tataaaa |
49521779 |
T |
|
| Q |
281 |
actttaacgaagatcgggcatatatgtaataactttccaaagatacaatgtgctagtctattggatatattacttttaataacatgacatgagggatccc |
380 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49521778 |
tctttaacgaagatcgagcatatatgtaataactttccaaagatacaatgtgctagtctattggatatattacttttaataacatgacatgagggatccc |
49521679 |
T |
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| Q |
381 |
tttcatttttgttctaaaaataataacaatatatgttatgatagcagaaaa |
431 |
Q |
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| T |
49521678 |
tttcatttttgttctaaaaatagtaacaatatatgttatgatagcagaaaa |
49521628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 167 - 426
Target Start/End: Original strand, 38870076 - 38870350
Alignment:
| Q |
167 |
gtttagaatcataacaatttaattttattagtaaaaaataaataattttgtaagtataagcaatggcagattattatttaaattttaaagcatgcttacc |
266 |
Q |
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| T |
38870076 |
gtttataatcatatcaatttaattttattagtaaaaaatttataatttt--aagtataagcaatgtcatattattatttaaattttaaagcaagcttatc |
38870173 |
T |
|
| Q |
267 |
aaataaatataaaaactttaacgaagatcgggcatatatgtaataactttccaaagataca--------atgtgctagtctattggatatattactttta |
358 |
Q |
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| T |
38870174 |
aaattaatataaaatctttaaccaaaatcatgtatatatgtaataacttttcgaagatacaatcaaatgatgtgccagcctattggatatattactttta |
38870273 |
T |
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| Q |
359 |
a------------taacatgacatgagggatccctttcatttttgttctaaaaataataacaat-atatgttatgatagca |
426 |
Q |
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| T |
38870274 |
acaagcaacaaattaacatgacat--gggatccc--tcatttttgttctaataataataacaataatatgtcatgatagca |
38870350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 83 - 359
Target Start/End: Original strand, 3566405 - 3566686
Alignment:
| Q |
83 |
tacattggctacataagttaaactaacgttcttatggtttgtgaatcaacttctaggtcaatcaacattgacaannnnnnn-gtagtttagaatcataa- |
180 |
Q |
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||||||||| |||||||||||||| | |||||||||||||||||||||||| |||| ||||| |||| ||||| || ||||||||||||| |
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| T |
3566405 |
tacattggcaacataagttaaacttaggttcttatggtttgtgaatcaactcctagaccaatcgacatcgacaatttttttagtcgtttagaatcatata |
3566504 |
T |
|
| Q |
181 |
------caatttaattttattagtaaaaaataaataattttgtaagtataagcaatggcagattattatttaaattttaaagcatgcttaccaaataaat |
274 |
Q |
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| T |
3566505 |
aattttcaatttaatttgattagtaaaaaataaataatt--gtatgtataagcaatgacatattattatttaaattttaaagcatgcttaccaaataaat |
3566602 |
T |
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| Q |
275 |
ataaaaactttaacgaagatcgggcatatatgtaataactttccaaagataca--------atgtgctagtctattggatatattacttttaa |
359 |
Q |
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| T |
3566603 |
ataaaa---------aagatcatgcatatttgtaacaactttccaaagatacaatcaaatgatgtgttagtctactggatatattacttttaa |
3566686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 350 - 431
Target Start/End: Original strand, 3567185 - 3567265
Alignment:
| Q |
350 |
ttacttttaataacatgacatgagggatccctttcatttttgttctaaaaataataacaat-atatgttatgatagcagaaaa |
431 |
Q |
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| T |
3567185 |
ttacttttaataa--tgacatgggggatccctttcatttttgttctaataatagtaacaataatatgttataatagcagaaaa |
3567265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 171 - 423
Target Start/End: Original strand, 290160 - 290426
Alignment:
| Q |
171 |
agaatcataacaatttaattttattagtaaaaaataaataattttgtaagtataagcaatggcagattattatt---taaattttaaagcatgcttacca |
267 |
Q |
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||||||||| ||||||||||||||||||||||| |||| |||||| ||||||||||||| || ||||||||| ||||||||||| ||||||| ||| |
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| T |
290160 |
agaatcatatcaatttaattttattagtaaaaa-taaacaattttt--agtataagcaatgacaaattattattatttaaattttaaaccatgcttgcca |
290256 |
T |
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| Q |
268 |
aataaatataaaaactttaacgaagatcgggcatatatgtaataactttccaaagatacaatg---tgctagtctattggatatattacttttaa----- |
359 |
Q |
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|||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||| | ||||| |
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| T |
290257 |
gataaatataaaatctttaacaaaaatcatgcatatatgtaataactttccaaagatacaatcaaatgatagtcaattggatatattgcatttaacaagc |
290356 |
T |
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| Q |
360 |
-------taacatgacatgagggatccctttcatttttgttctaaaaataataacaat-atatgttatgata |
423 |
Q |
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|||| ||||||| ||||||||||||||| |||||||| ||||| |||||| ||||||||||||| |
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| T |
290357 |
aacaaattaacctgacatg--ggatccctttcatttctgttctaataataacaacaataatatgttatgata |
290426 |
T |
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