View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1342_low_15 (Length: 521)

Name: NF1342_low_15
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1342_low_15
NF1342_low_15
[»] chr2 (3 HSPs)
chr2 (32-510)||(36297256-36297737)
chr2 (399-510)||(36301491-36301602)
chr2 (379-479)||(36299932-36300032)
[»] chr3 (1 HSPs)
chr3 (315-510)||(48299024-48299219)
[»] chr4 (1 HSPs)
chr4 (333-510)||(19302171-19302348)


Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 32 - 510
Target Start/End: Complemental strand, 36297737 - 36297256
Alignment:
Q  32 ataaacacgttcaatgtcgatttttcacattccaatgtaaattggtaatgtcacagtagaaactttctttggactaatactaatgtagtttatacaattc 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36297737 ataaacacgttcaatgtcgatttttcacattccaatgtaaattggtaatgtcacagtagaaactttctttggactaatactaatgtagtttatacaattc 36297638  T
Q  132 tctgaaaaacctgttaacaataaacatattaaattatgaaatcacnnnnnnnnnnnnnngaataaactacttataacatattctccaacacactttttat 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||    
T  36297637 tctgaaaaacctgttaacaataaacatattaaattatgaaatcacaaaaaattaaaaaagaataaactacttataacatattctccaacacactttttat 36297538  T
Q  232 aacacatctacatgaatttcttccaataatgaataaatgataatnnnnnnnnn---gtgtgctagatagtttcttgatagcattcatctttgaataacaa 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||    
T  36297537 aacacatctacatgaatttcttccaataatgaataaatgataataaaaaaaaaaaagtgtgctagatagtttcttgatagcattcatctttgaataacaa 36297438  T
Q  329 agaagatctaggtttatatgcatgattttcttgaccaagtaaaagtgccttcaaaatagcctcacataaacccttgtagtatataatcaaatggccacca 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36297437 agaagatctaggtttatatgcatgattttcttgaccaagtaaaagtgccttcaaaatagcctcacataaacccttgtagtatataatcaaatggccacca 36297338  T
Q  429 tctggaacttcatgatattgtatccatggtagcttccctgaaacaaatctttggagttcagagggcacaactttatcttcat 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36297337 tctggaacttcatgatattgtatccatggtagcttccctgaaacaaatctttggagttcagagggcacaactttatcttcat 36297256  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 399 - 510
Target Start/End: Complemental strand, 36301602 - 36301491
Alignment:
Q  399 cccttgtagtatataatcaaatggccaccatctggaacttcatgatattgtatccatggtagcttccctgaaacaaatctttggagttcagagggcacaa 498  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||| || | ||||| ||||||||||||||||||||||||||||||||    
T  36301602 cccttatagcatataatcaaatggccaccatctggaatttcatgatattgtatccaaggcatcttccatgaaacaaatctttggagttcagagggcacaa 36301503  T
Q  499 ctttatcttcat 510  Q
      ||||||||||    
T  36301502 tcttatcttcat 36301491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 379 - 479
Target Start/End: Complemental strand, 36300032 - 36299932
Alignment:
Q  379 tcaaaatagcctcacataaacccttgtagtatataatcaaatggccaccatctggaacttcatgatattgtatccatggtagcttccctgaaacaaatct 478  Q
    ||||||| |||||||| |  | ||| ||| ||| |||||||||||||| ||||||||||||||||| ||||||||| || ||||||| ||||||||||||    
T  36300032 tcaaaattgcctcacacatgctcttatagcataaaatcaaatggccacaatctggaacttcatgatcttgtatccaaggcagcttccatgaaacaaatct 36299933  T
Q  479 t 479  Q
    |    
T  36299932 t 36299932  T

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Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 315 - 510
Target Start/End: Original strand, 48299024 - 48299219
Alignment:
Q  315 tctttgaataacaaagaagatctaggtttatatgcatgattttcttgaccaagtaaaagtgccttcaaaatagcctcacataaacccttgtagtatataa 414  Q
    ||||||||||||||||  ||||||||| |||||||||| |||| | |  |||||||||||||| |||| || |||||||| |  ||||| ||| ||| ||    
T  48299024 tctttgaataacaaaggtgatctaggtctatatgcatggttttatggctcaagtaaaagtgccctcaatattgcctcacacatgcccttatagcataaaa 48299123  T
Q  415 tcaaatggccaccatctggaacttcatgatattgtatccatggtagcttccctgaaacaaatctttggagttcagagggcacaactttatcttcat 510  Q
    ||| |||||||| || |||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||| |||||||||| ||||||||||    
T  48299124 tcagatggccactatttggaacttcatgatattgtatccaaggtagctgccatgaaacaaatctttgaagttcaaagggcacaaccttatcttcat 48299219  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 333 - 510
Target Start/End: Original strand, 19302171 - 19302348
Alignment:
Q  333 gatctaggtttatatgcatgattttcttgaccaagtaaaagtgccttcaaaatagcctcacataaacccttgtagtatataatcaaatggccaccatctg 432  Q
    |||||||||||||||| |  || |||||  ||||||||||||||||||||||| ||||| | ||| ||  | || | || ||| |||||||||||||||     
T  19302171 gatctaggtttatatgaaatatcttcttccccaagtaaaagtgccttcaaaatcgcctcgcctaagccactataatgtacaattaaatggccaccatcta 19302270  T
Q  433 gaacttcatgatattgtatccatggtagcttccctgaaacaaatctttggagttcagagggcacaactttatcttcat 510  Q
     ||||||||||||||||||||||||||||||| ||||||  || ||||| | || ||||||||| |||||||||||||    
T  19302271 caacttcatgatattgtatccatggtagcttctctgaaatgaacctttgaatttgagagggcactactttatcttcat 19302348  T

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