View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_16 (Length: 496)
Name: NF1342_low_16
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 104 - 452
Target Start/End: Original strand, 40071105 - 40071451
Alignment:
| Q |
104 |
atgtttctctttaacatatcttatcttgtgttaaggagaatgctcttttgatattaatatatttcattttagtttgttnnnnnnnnnnnnnnnnnnncat |
203 |
Q |
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| T |
40071105 |
atgtttctctttagcatatcttatcttgtgttaaggagaatgctcttttgatattaatatattttattttagcttgttaaaaaaactcataaaaaa-cat |
40071203 |
T |
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| Q |
204 |
agaaaatgccttaccacttctccaaagttcagccatgtgaataggggaacgacttccctgcagtatatttttatttgtaaaggcaattcgctactattag |
303 |
Q |
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| T |
40071204 |
agaaaatgccttgccacttatccaaagttcagctatgtgaat-ggggaacgacttccctgcagtatatttttatttgtaaaggcaattcgctactattag |
40071302 |
T |
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| Q |
304 |
cagtttccgcaattatggtctcgattgcaaataaagatcacatagtttatgtttaattataaaacttataatgaattgtcttatttatatcagataagtt |
403 |
Q |
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| T |
40071303 |
cagtttccgcatttatggtctcgattgcaaataaagatcacatagtttatgtttatttatcaaacttataatgaattgtcttatttatatcagataagtt |
40071402 |
T |
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| Q |
404 |
aaattaaaactactatggagatctttcattaccaattgagatcacatat |
452 |
Q |
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| T |
40071403 |
aaattaaaactactaaggagatctttcattaccaattgagatcacatat |
40071451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 486
Target Start/End: Original strand, 40071447 - 40071475
Alignment:
| Q |
458 |
catatccgttgtaaattggtaagtctctg |
486 |
Q |
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| T |
40071447 |
catatccgttgtaaattggtaagtctctg |
40071475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 18015491 - 18015532
Alignment:
| Q |
140 |
agaatgctcttttgatattaatatatttcattttagtttgtt |
181 |
Q |
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| T |
18015491 |
agaatgctttttcgatattaatatatttcattttagcttgtt |
18015532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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