View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1342_low_17 (Length: 489)
Name: NF1342_low_17
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 105 - 395
Target Start/End: Original strand, 52584418 - 52584708
Alignment:
| Q |
105 |
gattattctcgtttgctgcaccaagtagatccatcaaatgtcttgtgtgactcatctcagaaccttgtgctagcccaatattgttagaaaatgttccaag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52584418 |
gattattctcgtttgctgcaccaagtagatccatcaaatgtcttgtgtgactcatctcagaaccttgtgctagcccaatattgttagaaaatgttccaag |
52584517 |
T |
|
| Q |
205 |
tgattcatgatatgcattgttgtttctcaaagaagatgaaacataaccaccacctagtagttcttggttctcaaattgattttgatgggtcatggagttt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52584518 |
tgattcatgatatgcattgttgtttctcaaagaagatgaaacataaccaccacctagtagttcttggttctcaaattgattttgatgggtcatggagttt |
52584617 |
T |
|
| Q |
305 |
gacatcattaattgtagctagcnnnnnnngtctgagagaaagtgattgaaaaaataaactagttctatacttgtattgtattgtgtccctt |
395 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52584618 |
gacatcattaattgtagctagctttttttgtctgagagaaagtgattgaataaataaactagttctatacttgtattgtattgtgtccctt |
52584708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University