View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_18 (Length: 485)
Name: NF1342_low_18
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 42342455 - 42342000
Alignment:
| Q |
1 |
tgtctctaaattttctatggctaattatagtttagaccatcattggttacctgttgtcttcttctcctctcgagttcagcctgaagaataaaagaagcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342455 |
tgtctctaaattttctatggctaattatagtttagaccatcattggttacctgttgtcttcttctcctctcgagttcagcctgaagaataaaagaagcat |
42342356 |
T |
|
| Q |
101 |
gatccttgtcagtataattgaatcactaaagaaaaactatcaaatattcttataatagttcatgttgtttggcagtaccagtgcctgtttcagttgagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342355 |
gatccttgtcagtataattgaatcactaaagaaaaactatcaaatattcttataatagttcatgttgtttggcagtaccagtgcctgtttcagttgagaa |
42342256 |
T |
|
| Q |
201 |
ttctcttctcttaattgattcagttctgcttctaattcaactgtataggcctgcnnnnnnnnnnnnnnnnnntgtgtcacaaaggagtcacattaacaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42342255 |
ttctcttctcttaattgattcagttctgcttctaattcaactgtataggcctgcaaaagcaacaaagaaaaatgtgtcacaaaggagtcacattaacaat |
42342156 |
T |
|
| Q |
301 |
ataatggcaaatattaaactagattaaacatactatttctaatttggatgtaaagagttgataaaaaattgacatattaccaattcttcttaaactaatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342155 |
ataatggcaaatattaaactagattaaacatactatttctaatttggatgtaaagagttgataaaaaattgacatattaccaattcttcttaaactaatg |
42342056 |
T |
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| Q |
401 |
ttaccttcaatagcatataaatataatgttgtattatcttgatcatatatacataa |
456 |
Q |
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| T |
42342055 |
ttaccttcaatagcatataaatataatgctgtattatcttgatcatatatacataa |
42342000 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 9522495 - 9522550
Alignment:
| Q |
185 |
ctgtttcagttgagaattctcttctcttaattgattcagttctgcttctaattcaa |
240 |
Q |
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|||||||||| |||||| |||| |||||| ||||||| ||||||||||||||||| |
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| T |
9522495 |
ctgtttcagtcaagaattatcttatcttaactgattcaattctgcttctaattcaa |
9522550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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