View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_21 (Length: 443)
Name: NF1342_low_21
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 111 - 443
Target Start/End: Original strand, 29924688 - 29925026
Alignment:
| Q |
111 |
agatgaagtggtgatgatttctattgcttgcgttgtcgttttgttcagtttacaaaagtatggaa---gtga---tggaactagtaaagttgctgcattg |
204 |
Q |
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| T |
29924688 |
agatgaagtggtgatgatttctgttgcttgccttgtcgttttgttcagtttacagaagtatggaacaagtaaagttgggcttgctgtaggacctgcattg |
29924787 |
T |
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| Q |
205 |
tttacatggttctgttctcttgcgggcaatggtgtatacaatcttgtcaaatatgacagtagcgtttttagggcttttaatcctattcacatctattatt |
304 |
Q |
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| T |
29924788 |
tttatatggttctgttctcttgcgggcaatggtgtatacaatcttgtcaaatatgacagcagcgtttttagggcttttaatcctattcacatctattatt |
29924887 |
T |
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| Q |
305 |
tctttgcaaggaattcaactaaagcatggtattctcttgggggctgtcttctgtgtgcaactggtaaacacatatgcagaatcattgatatggtagatgt |
404 |
Q |
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| T |
29924888 |
tctttgcaaggaattcaactaaagcatggtattctcttgggggctgtcttctgtgtgcaactggtaaacacatatgcagaatcattgatatggtagatgt |
29924987 |
T |
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| Q |
405 |
gataatatatattctctcttgtcgtgtatattttgattc |
443 |
Q |
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| T |
29924988 |
gataatatatattctctcttgtcgtgtatattttgattc |
29925026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 96 - 352
Target Start/End: Complemental strand, 10032912 - 10032665
Alignment:
| Q |
96 |
agatgcaattcaacaagatgaagtggtgatgatttctattgcttgcgttgtcgttttgttcagtttacaaaagtatggaagtgatggaactagtaaagtt |
195 |
Q |
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| T |
10032912 |
agatgcaattcaacaagatgaagtggtgatgatttctattgcttgccttgtcgttttgttcagtttacaaaagtatggaa---------caagtaaagtt |
10032822 |
T |
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| Q |
196 |
gctgcattgtttacatggttctgttctcttgcgggcaatggtgtatacaatcttgtcaaatatgacagtagcgtttttagggcttttaatcctattcaca |
295 |
Q |
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| T |
10032821 |
gctgcattgtttacatggttctgttctcttgcgggcaatggtgtatacaatcttgtcaaatatgacaacaacgtttttagggcttttaatcctattcaca |
10032722 |
T |
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| Q |
296 |
tctattatttctttgcaaggaattcaactaaagcatggtattctcttgggggctgtc |
352 |
Q |
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| T |
10032721 |
tctattatttctttgcaaggaattcaactaaagcatggtattctcttgggggttgtc |
10032665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 212 - 367
Target Start/End: Complemental strand, 15952684 - 15952525
Alignment:
| Q |
212 |
ggttctgttctcttgcgggcaatggtgtatacaatcttgtcaaatatgacagtagcgtttttagggcttttaatcctattcacatctattatttctttgc |
311 |
Q |
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| T |
15952684 |
ggttctgttctcttgcgggtaatggtgtatactatcttgtcaaatatgacagcagcgtttttagggcttttaatcctattcacatctattatttctttgc |
15952585 |
T |
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| Q |
312 |
aaggaattcaactaaagcatggtattctcttg----ggggctgtcttctgtgtgcaactg |
367 |
Q |
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| T |
15952584 |
aaggaattcaactaaagcatggtattctcttgggccggggttgtcttctgtgtccaactg |
15952525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 15952799 - 15952720
Alignment:
| Q |
96 |
agatgcaattcaacaagatgaagtggtgatgatttctattgcttgcgttgtcgttttgttcagtttacaaaagtatggaa |
175 |
Q |
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| T |
15952799 |
agatgcaattcgacaagatgaagtggtgatgatttctgttgcttgccttgtcgttttgttcagtttacagaagtatggaa |
15952720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 197 - 374
Target Start/End: Original strand, 1636777 - 1636954
Alignment:
| Q |
197 |
ctgcattgtttacatggttctgttctcttgcgggcaatggtgtatacaatcttgtcaaatatgacagtagcgtttttagggcttttaatcctattcacat |
296 |
Q |
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| T |
1636777 |
ctgctttgttcatatggttttgttctcttgccggtatcgggatatacaatcttctcaaatatgacagaagtgtcttgagggcattcaatcccattcatat |
1636876 |
T |
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| Q |
297 |
ctattatttctttgcaaggaattcaactaaagcatggtattctcttgggggctgtcttctgtgtgcaactggtaaaca |
374 |
Q |
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| T |
1636877 |
ctactatttcttcaagaggaactcaactaaagcatggtattctctcgggggttgtcttctgtgtgcaaccggtaaaca |
1636954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 1636685 - 1636749
Alignment:
| Q |
111 |
agatgaagtggtgatgatttctattgcttgcgttgtcgttttgttcagtttacaaaagtatggaa |
175 |
Q |
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| T |
1636685 |
agatgaagtggtgatgatttcagttgcctgcctgattgttttgttcagtgtacaaaagtatggaa |
1636749 |
T |
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