View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1342_low_29 (Length: 372)
Name: NF1342_low_29
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_29 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0001 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 30 - 369
Target Start/End: Original strand, 505863 - 506202
Alignment:
| Q |
30 |
catacatacccctaatccaacagccccaagaccaaaaacagctacagttgaaccactttcaatattggcttctttccaacaagctccataaccagttgaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
505863 |
catacatacccctaatccaacagccccaagaccaaaaacagctacagttgaaccactttcaatattggcttctttccaacaagctccataaccagttgaa |
505962 |
T |
|
| Q |
130 |
aacccacatgagatgaaactagcataagctagattaatgtttggatcaactttaacaaggtaattgatatcaaccaccacatattccgaccatgaagcac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
505963 |
aacccacatgagatgaaactagcataagctagattaatgtttggatcaactctaagaaggtaattgatatcaaccaccacatattccgaccatgaagcac |
506062 |
T |
|
| Q |
230 |
aactcaaaacatggtataatgtttggcctcggacagacaaccttgaagtgttatctggcattagaccagtcaatctcacaggatgtgtcaaacacaaatt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
506063 |
aactcaaaacatggtataatgtttggcctcggacagacaaccttgaagtgttatctggcattagaccagtcaatctcacaggatgtgtcaaacacaaatt |
506162 |
T |
|
| Q |
330 |
ggttttcccagaaacacaattctcacattcatctcactcg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
506163 |
ggttttcccagaaacacaattctcacattcttcacactcg |
506202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 35 - 359
Target Start/End: Original strand, 20051762 - 20052086
Alignment:
| Q |
35 |
atacccctaatccaacagccccaagaccaaaaacagctacagttgaaccactttcaatattggcttctttccaacaagctccataaccagttgaaaaccc |
134 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| ||||| ||| |||||||||||| || |||||||| |||||| ||| |||||||||||||||||||| |
|
|
| T |
20051762 |
atacccctaagccaacagctccaagaccaaacacagcaacacttgaaccacttttaaccttggcttccttccaagcagcaccataaccagttgaaaaccc |
20051861 |
T |
|
| Q |
135 |
acatgagatgaaactagcataagctagattaatgtttggatcaactttaacaaggtaattgatatcaaccaccacatattccgaccatgaagcacaactc |
234 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||| ||||| | |||||| |||| |||||| || ||||| |||||||||| |||||||||| |
|
|
| T |
20051862 |
acatgagatgaaacttgcataagctagattaatggttggatcgactttgagaaggtagttgacatcaacaacgacatactccgaccatgtagcacaactc |
20051961 |
T |
|
| Q |
235 |
aaaacatggtataatgtttggcctcggacagacaaccttgaagtgttatctggcattagaccagtcaatctcacaggatgtgtcaaacacaaattggttt |
334 |
Q |
| |
|
|||||||| |||| | |||||||||| || ||||| |||||||||||||| ||||||||||| || ||||||||||| | ||| | ||| | |||||||| |
|
|
| T |
20051962 |
aaaacatgatatagtctttggcctcgaacggacaatcttgaagtgttatcgggcattagaccggtgaatctcacagggtatgtaagacaaagattggttt |
20052061 |
T |
|
| Q |
335 |
tcccagaaacacaattctcacattc |
359 |
Q |
| |
|
| | |||||||||||| ||||||| |
|
|
| T |
20052062 |
ttcttgaaacacaattcacacattc |
20052086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University