View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_36 (Length: 336)
Name: NF1342_low_36
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 46660269 - 46660394
Alignment:
| Q |
200 |
atgatgagtaaaattttagatatggggtgctacataagttgccataccttgttgatagccagaggatttcctaggacttgcagcaccaattcgcatcgcc |
299 |
Q |
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| T |
46660269 |
atgaagagtgaaatttcagatatgagacgctatataagttgccctaccttgttgatagccagaggatttcctaggagttgcagcaccaattcgcattgcc |
46660368 |
T |
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| Q |
300 |
ctgctagaacagaaaacaccattcat |
325 |
Q |
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| T |
46660369 |
ctgctagaacagaaaacaccattcat |
46660394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 21423246 - 21423280
Alignment:
| Q |
28 |
cagttataagatctaacttctcaacctgcagcaca |
62 |
Q |
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| T |
21423246 |
cagttataagatctaacttctcaacctgcagcaca |
21423280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 5638545 - 5638407
Alignment:
| Q |
28 |
cagttataagatctaacttctcaacctgcagcacaaaaccactaatcatcaatagcagtacaatatcaaatttattta------taaaaaacgaaaatat |
121 |
Q |
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| T |
5638545 |
cagttataagatctaacttatcaacctgcagcacacaaccactaatcataaacagaagtacaatttaaaatttatttaaaaaacaaaaaaacaaaaatat |
5638446 |
T |
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| Q |
122 |
acacacccacgcccaaatagaacttttcagtacatactg |
160 |
Q |
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| T |
5638445 |
acacacccacgcccaaatagaacttttcagtacatactg |
5638407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 6174249 - 6174166
Alignment:
| Q |
242 |
cataccttgttgatagccagaggatttcctaggacttgcagcaccaattcgcatcgccctgctagaacagaaaacaccattcat |
325 |
Q |
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| T |
6174249 |
catacctggttgatggccagatgatttccttggagttgcagcaccgatacgcatgggcctgctagaacagtaaacaccgttcat |
6174166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 30634460 - 30634518
Alignment:
| Q |
28 |
cagttataagatctaacttctcaacctgcagcacaaaaccactaatcatcaatagcagta |
87 |
Q |
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| T |
30634460 |
cagttataagatctaacttctcaacctgcagcacacgaccac-aatcaccaacagcagta |
30634518 |
T |
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