View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_41 (Length: 317)
Name: NF1342_low_41
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_41 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 506179 - 506476
Alignment:
| Q |
1 |
caattctcacattcttcacactcgcctatgtatgttggaactatgaagtccccttcttttagatttgttacttgatcaccaatactctctacaacactgc |
100 |
Q |
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| T |
506179 |
caattctcacattcttcacactcgcctatgtatgttggaattatgaaatccccttcttttagatttgttacttgatcaccaatactctctacaacactgc |
506278 |
T |
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| Q |
101 |
atttcatcagattatttgtagatgtaaactatagattcatatgtggtctatagtaaagactatatacattgaat-aatctgaaatataaatttttactta |
199 |
Q |
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| T |
506279 |
atttcatcagattatttgtagatgtaaactatagattcatctgtggtctatagtaaagactatatacattgaatgaatctgaaata------------ta |
506366 |
T |
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| Q |
200 |
ttatagtgaccggaagatgtaagtcacaacacaaagtatttctatctcttgattatatttataggagaatgtaataattaagagaaagctttacccaatt |
299 |
Q |
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| T |
506367 |
ttatagtgaccggaaggtgtaagtcacaacacaaagtatttctatctcttgattatatttataggagaatgtaataattaagagaaagctttacccaatt |
506466 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 42530532 - 42530487
Alignment:
| Q |
175 |
aatctgaaatataaatttttacttattatagtgaccggaagatgta |
220 |
Q |
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| T |
42530532 |
aatctaaaatgtaaatttttacttataatagtgaccggatgatgta |
42530487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 41346507 - 41346471
Alignment:
| Q |
175 |
aatctgaaatataaatttttacttattatagtgaccg |
211 |
Q |
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| T |
41346507 |
aatctaaaatataaatttttacttataatagtgaccg |
41346471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 52215920 - 52215872
Alignment:
| Q |
175 |
aatctgaaatataaatttttacttattatagtgaccggaagatgtaagt |
223 |
Q |
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||||| |||| ||||||||| ||||| |||||||||||| ||||||||| |
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| T |
52215920 |
aatctaaaatgtaaatttttgcttataatagtgaccggaggatgtaagt |
52215872 |
T |
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