View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_42 (Length: 316)
Name: NF1342_low_42
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 52584618 - 52584902
Alignment:
| Q |
20 |
gacatcatcaattgtagctagcnnnnnnngtctgagagaaagtgattgaaaaaataaactagttctatacttgtattgtattgtgtcccttaagggaaca |
119 |
Q |
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| T |
52584618 |
gacatcattaattgtagctagctttttttgtctgagagaaagtgattgaataaataaactagttctatacttgtattgtattgtgtcccttaagggaaca |
52584717 |
T |
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| Q |
120 |
actcaattggaaaaatgaagcatgtgagttttgtgatgtggatctctctagaacagtgaaagaagagagatttttatggaaaaagagaaaaggagtgaaa |
219 |
Q |
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| T |
52584718 |
actcaattggaaaaatgaagcatgtgagttttgtgatgtggatctctctagaacagtgaaagaagagagatttttatggaaaaggagaaaaggagtgaaa |
52584817 |
T |
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| Q |
220 |
gggggaatcgaatcgaatcgaatcaacactgttttttacgtactgaagaaactatttgagcaaaaaagctagtatagtatatatt |
304 |
Q |
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| T |
52584818 |
gggggaatcgaatcgaatcgaatcaacactgttttttacgtactgaagaaactatttgagcaaaaaagctagtatagtatatatt |
52584902 |
T |
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