View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_45 (Length: 314)
Name: NF1342_low_45
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 63 - 237
Target Start/End: Original strand, 46122594 - 46122768
Alignment:
| Q |
63 |
aggaagaaagagcataagagtactatcaaaattgaggcggaacccggtggttggagaaggaaagaggacggcgttttcttaatacggaagaataaacgcc |
162 |
Q |
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| T |
46122594 |
aggaagaaagagcataagagtactatcaaaattgaggcggaatccggtggttggagaaggaaagaggacggcgttttcttaatacggaagaataaacgcc |
46122693 |
T |
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| Q |
163 |
ctgattctctatcgaagaggcgaaagttttttcgagaagaaactttttctccaatgctcaatgaggatcctcctt |
237 |
Q |
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| T |
46122694 |
ctgattctatctcgaagaggagaaagttttttcgagaagaaactttttctccaatgctcaatgaggatcctcctt |
46122768 |
T |
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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 46128735 - 46128795
Alignment:
| Q |
177 |
aagaggcgaaagttttttcgagaagaaactttttctccaatgctcaatgaggatcctcctt |
237 |
Q |
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| T |
46128735 |
aagaggcgaaagttttttcgtgaagatacttcttctccaatgcccactgaggatcctcctt |
46128795 |
T |
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