View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1342_low_47 (Length: 312)
Name: NF1342_low_47
Description: NF1342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1342_low_47 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 49521785 - 49521628
Alignment:
| Q |
65 |
tataaaaactttaacgaagatcgggcatatatgtaataactttccaaagatacaatgtgctagtctattggatatattacttttaataacatgacatgag |
164 |
Q |
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| T |
49521785 |
tataaaatctttaacgaagatcgagcatatatgtaataactttccaaagatacaatgtgctagtctattggatatattacttttaataacatgacatgag |
49521686 |
T |
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| Q |
165 |
ggatccctttcatttttgttctaaaaataataacaatatatgttatgatagcagaaaa |
222 |
Q |
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| T |
49521685 |
ggatccctttcatttttgttctaaaaatagtaacaatatatgttatgatagcagaaaa |
49521628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 38870143 - 38870350
Alignment:
| Q |
27 |
attattatttaaattttaaagcatgcttaccaaataaatataaaaactttaacgaagatcgggcatatatgtaataactttccaaagataca-------- |
118 |
Q |
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| T |
38870143 |
attattatttaaattttaaagcaagcttatcaaattaatataaaatctttaaccaaaatcatgtatatatgtaataacttttcgaagatacaatcaaatg |
38870242 |
T |
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| Q |
119 |
atgtgctagtctattggatatattacttttaa------------taacatgacatgagggatccctttcatttttgttctaaaaataataacaat-atat |
205 |
Q |
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| T |
38870243 |
atgtgccagcctattggatatattacttttaacaagcaacaaattaacatgacat--gggatccc--tcatttttgttctaataataataacaataatat |
38870338 |
T |
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| Q |
206 |
gttatgatagca |
217 |
Q |
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| T |
38870339 |
gtcatgatagca |
38870350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 49521821 - 49521786
Alignment:
| Q |
15 |
aagcaaaggcagattattatttaaattttaaagcat |
50 |
Q |
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| T |
49521821 |
aagcaacggcagattattatttaaattttaaagcat |
49521786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 290225 - 290426
Alignment:
| Q |
27 |
attattatttaaattttaaagcatgcttaccaaataaatataaaaactttaacgaagatcgggcatatatgtaataactttccaaagatacaatg---tg |
123 |
Q |
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| T |
290225 |
attattatttaaattttaaaccatgcttgccagataaatataaaatctttaacaaaaatcatgcatatatgtaataactttccaaagatacaatcaaatg |
290324 |
T |
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| Q |
124 |
ctagtctattggatatattacttttaa------------taacatgacatgagggatccctttcatttttgttctaaaaataataacaat-atatgttat |
210 |
Q |
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| T |
290325 |
atagtcaattggatatattgcatttaacaagcaacaaattaacctgacatg--ggatccctttcatttctgttctaataataacaacaataatatgttat |
290422 |
T |
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| Q |
211 |
gata |
214 |
Q |
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|||| |
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| T |
290423 |
gata |
290426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 3567185 - 3567265
Alignment:
| Q |
141 |
ttacttttaataacatgacatgagggatccctttcatttttgttctaaaaataataacaat-atatgttatgatagcagaaaa |
222 |
Q |
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| T |
3567185 |
ttacttttaataa--tgacatgggggatccctttcatttttgttctaataatagtaacaataatatgttataatagcagaaaa |
3567265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 3566564 - 3566686
Alignment:
| Q |
27 |
attattatttaaattttaaagcatgcttaccaaataaatataaaaactttaacgaagatcgggcatatatgtaataactttccaaagataca-------- |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| ||||||||||||||||| |
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| T |
3566564 |
attattatttaaattttaaagcatgcttaccaaataaatataaaa---------aagatcatgcatatttgtaacaactttccaaagatacaatcaaatg |
3566654 |
T |
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| Q |
119 |
atgtgctagtctattggatatattacttttaa |
150 |
Q |
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| T |
3566655 |
atgtgttagtctactggatatattacttttaa |
3566686 |
T |
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